LOC117597097


Basic Information

Item Value
gene id LOC117597097
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4117786 ~ 4118590 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578031.1
AGGAAAGCAGCAGAAAACCAATCAGACATCAGAGCAGAATCAGAGCCGGTCAGGAGCTGAAGACTCTCAGTCAGGATACACACCACTTCAGGCTGGTGAAGCTGCAGCTGAGAGTGAAGCCGCTTACGCACAGGtcatgaagaaaaagaagagaaacaggAACAATGGTGCTGATGCTGAAGCTGGTGTTAGTGATGTTACTTATGCTGAGCTTGAACTAAAACCAATGAAAAAAGCAAAGAGAATAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578031.1 True 251 lncRNA 0.45 3 4117786 4118590

Neighbor

gene id symbol gene type direction distance location
LOC117597051 LOC108261462,LOC108261092 coding upstream 737 4090797 ~ 4117049 (+)
LOC117597091 LOC108261462,LOC108261092 coding upstream 74917 3988753 ~ 4042869 (+)
LOC117597099 NA coding upstream 111445 4005153 ~ 4006341 (+)
LOC113547235 LOC108261462,LOC108261092,LOC108261095,LOC108261482,LOC108268217 coding upstream 137166 3973201 ~ 3980620 (+)
wdr60 NA coding upstream 519272 3586625 ~ 3598514 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding downstream 197188 4315778 ~ 4334167 (+)
LOC117597055 LOC108261462,LOC108261092 coding downstream 276895 4395485 ~ 4408386 (+)
LOC117597057 NA coding downstream 298959 4417549 ~ 4431006 (+)
LOC117597089 NA coding downstream 345348 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding downstream 360908 4479498 ~ 4487366 (+)
G59139 NA non-coding upstream 62556 4054310 ~ 4055230 (+)
G59136 NA non-coding upstream 66538 4047039 ~ 4051248 (+)
G59124 NA non-coding upstream 141815 3975285 ~ 3975971 (+)
G59115 NA non-coding upstream 171174 3895574 ~ 3946612 (+)
G59112 NA non-coding upstream 203384 3890574 ~ 3914402 (+)
G59304 NA non-coding downstream 436805 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 545021 4663611 ~ 4664466 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 547422 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 551273 4669863 ~ 4670083 (+)
G59343 NA non-coding downstream 552390 4670980 ~ 4671460 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other upstream 56272 3739301 ~ 4061514 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 381463 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 469726 3639830 ~ 3648060 (+)
wdr97 LOC108268253 other upstream 487676 3611092 ~ 3630110 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 1283277 2821311 ~ 2834509 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other downstream 172028 4290618 ~ 4296465 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 414331 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 531887 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 588852 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 828547 4947137 ~ 4956467 (+)

Expression


Co-expression Network