LOC117597099


Basic Information

Item Value
gene id LOC117597099
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4005153 ~ 4006341 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578033.1
aaacagGAACAATGAAAAGGCCAGTGTGGGTGATGATACTGTCTACTCAGAGGTGAAGCACAACATGGAGtgagccgtgtgtctgtgtccactgATGAAGCTACAGTTATCAAACAGATCGCTGGAAAACTGTGATTTGTGTTTGTCTTCAGTTTTTCCTAAAACGCTCAGAAAGGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578033.1 True 179 ncRNA 0.43 3 4005153 4006341

Neighbor

gene id symbol gene type direction distance location
LOC113547235 LOC108261462,LOC108261092,LOC108261095,LOC108261482,LOC108268217 coding upstream 24533 3973201 ~ 3980620 (+)
wdr60 NA coding upstream 406639 3586625 ~ 3598514 (+)
LOC117597046 NA coding upstream 484505 3501809 ~ 3520648 (+)
dnajb6b dnajb6 coding upstream 816686 3149618 ~ 3188467 (+)
LOC113524001 LOC108261393,LOC108268234,LOC108268232,LOC108261094,LOC108268231 coding upstream 855957 3139120 ~ 3149196 (+)
LOC117597051 LOC108261462,LOC108261092 coding downstream 84456 4090797 ~ 4117049 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding downstream 309437 4315778 ~ 4334167 (+)
LOC117597055 LOC108261462,LOC108261092 coding downstream 389144 4395485 ~ 4408386 (+)
LOC117597057 NA coding downstream 411208 4417549 ~ 4431006 (+)
LOC117597089 NA coding downstream 457597 4463938 ~ 4513463 (+)
G59124 NA non-coding upstream 29182 3975285 ~ 3975971 (+)
G59115 NA non-coding upstream 58541 3895574 ~ 3946612 (+)
G59112 NA non-coding upstream 90751 3890574 ~ 3914402 (+)
LOC117597093 NA non-coding upstream 93407 3905850 ~ 3911746 (+)
G59104 NA non-coding upstream 236967 3767838 ~ 3768186 (+)
G59136 NA non-coding downstream 40698 4047039 ~ 4051248 (+)
G59139 NA non-coding downstream 47969 4054310 ~ 4055230 (+)
LOC117597097 NA non-coding downstream 111445 4117786 ~ 4118590 (+)
G59304 NA non-coding downstream 549054 4555395 ~ 4555599 (+)
G59338 LOC108268240 non-coding downstream 657270 4663611 ~ 4664466 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 268830 3728456 ~ 3736323 (+)
LOC113525491 NA other upstream 357093 3639830 ~ 3648060 (+)
wdr97 LOC108268253 other upstream 375043 3611092 ~ 3630110 (+)
grpel1 grpel1,LOC107739410,LOC107653296,LOC107590998 other upstream 1170644 2821311 ~ 2834509 (+)
trnav-cac_4 NA other upstream 1288932 2716149 ~ 2716221 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other downstream 42811 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other downstream 284277 4290618 ~ 4296465 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other downstream 526580 4532921 ~ 4553038 (+)
LOC117597167 NA other downstream 644136 4650477 ~ 4653121 (+)
G59366 ube3c other downstream 701101 4707442 ~ 4708398 (+)

Expression


Co-expression Network