LOC117597101


Basic Information

Item Value
gene id LOC117597101
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4337248 ~ 4338266 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578035.1
tgtgtctgtgtgtgcatgtgagcatGTTGGTTTAATTTTGTTGGTATATGTTGGTGTTTTTTAGTTcctgtatttttgttcatttcttcttGTGTGTTCTGCTTCAGGAGCTGGGGGACGCCGGCAGGGAGGCTTGGCACCTGGTGGCTGGgtacctgtgtctgtgtgtttcacctTTCTGGCAGTGTAGTGTCACCTGGGTGTGctgtgcagtgtatgtgtgcgctTCACGTGTGGTCTTTTTTTGGAGCCTCCTTCCAGATCGCCTCCCTGTGagaaaacatCCATTCGAAATTAAAGCAGTACAATGaatgtgtctttaaaaaaaaaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578035.1 True 333 lncRNA 0.46 2 4337248 4338266

Neighbor

gene id symbol gene type direction distance location
LOC117597053 LOC108261092,LOC108261462,LOC108261482 coding downstream 52856 4269168 ~ 4284392 (-)
LOC117597100 NA coding downstream 612683 3710571 ~ 3724565 (-)
LOC113525490 LOC108261092,LOC108261462 coding downstream 626701 3704774 ~ 3710547 (-)
esyt2b esyt2 coding downstream 754236 3538315 ~ 3583012 (-)
LOC117597049 ncapg2 coding downstream 802429 3526493 ~ 3534819 (-)
maf1b maf1,LOC108268258 coding upstream 176337 4514603 ~ 4527107 (-)
LOC113547216 NA coding upstream 266906 4605172 ~ 4609562 (-)
LOC113547217 LOC108268239 coding upstream 274762 4613028 ~ 4633265 (-)
LOC113547273 LOC108268233 coding upstream 296059 4634325 ~ 4640284 (-)
LOC113547271 LOC108268229 coding upstream 312428 4650694 ~ 4660380 (-)
G59223 NA non-coding downstream 55349 3902938 ~ 4281899 (-)
LOC113537515 LOC106515577 non-coding downstream 113793 4221877 ~ 4223455 (-)
G59249 LOC108268217,LOC108261462 non-coding downstream 139109 4197328 ~ 4198139 (-)
LOC117597094 NA non-coding downstream 182163 4146816 ~ 4155085 (-)
LOC113547221 NA non-coding downstream 380155 3914583 ~ 3957093 (-)
LOC117597095 NA non-coding upstream 24818 4363084 ~ 4411032 (-)
G59287 NA non-coding upstream 148251 4486517 ~ 4487970 (-)
G59303 NA non-coding upstream 216434 4554700 ~ 4554909 (-)
G59385 NA non-coding upstream 221467 4559733 ~ 4560510 (-)
LOC117597175 LOC108268239 non-coding upstream 242675 4580941 ~ 4596531 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 80964 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 127142 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 417117 3894592 ~ 3920131 (-)
si:ch73-174h16.4 LOC108268225 other downstream 698040 3629988 ~ 3639208 (-)
G59069 NA other downstream 746511 3586783 ~ 3590737 (-)
LOC117597059 LOC108268206,LOC108268239 other upstream 222522 4560788 ~ 4571827 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other upstream 303754 4642020 ~ 4647880 (-)
LOC117597188 LOC108262218,LOC108262433 other upstream 590094 4928360 ~ 4945021 (-)
LOC113547297 NA other upstream 744542 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 1140276 5478542 ~ 5494039 (-)

Expression


Co-expression Network