LOC117597152


Basic Information

Item Value
gene id LOC117597152
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9107528 ~ 9109965 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578045.1
GTCTTTGTCACACAAGCTCTCTCGCCCTTTGCAGTTATGAAGTATGtaagtatgaaagtaaaaatatcccactctcaattttttttttgttgcatcttGTAGAATGTTCAGATACCtaagctttcttaaaaaatattttaaaaaatacattataatttgtTGAGTAAGAGATTACTTTTCTCTGTCTCAGAAGTTTCAGCCTGCAGGTCAGTCTGCAATAACATTAAtcacatcatttgtttttgaCATTAGTTAACCTTCTCCCCTacagtctttatttttttctattttaaaagaTGGTGATAACATCTACGAAAATACTAATATCAGAACCACAGATGATTCTGCAGCTGAAGCCAGCAATATGCTCTACTCAGAGGTTGTCACTaggaagaagaaacaaaaggATGATTCTGCAGCTGAAGCCAGCAATATGCTCTACTCAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578045.1 True 448 lncRNA 0.34 3 9107528 9109965

Neighbor

gene id symbol gene type direction distance location
LOC113524717 LOC107663573 coding downstream 182591 8917374 ~ 8924937 (-)
LOC113526862 LOC108267289 coding downstream 539540 8564114 ~ 8567988 (-)
LOC117596993 NA coding downstream 546496 8544276 ~ 8561032 (-)
LOC113526472 NA coding downstream 656530 8447383 ~ 8450998 (-)
efcab14 efcab14 coding downstream 988642 8106893 ~ 8118886 (-)
LOC117597149 NA coding upstream 258757 9368722 ~ 9377012 (-)
LOC113540032 NA coding upstream 274020 9383985 ~ 9389481 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding upstream 281038 9391003 ~ 9412913 (-)
dusp19b dus19 coding upstream 325169 9435134 ~ 9437967 (-)
capn1 capn1,LOC108267277,LOC108440273,LOC107728026,LOC106608991 coding upstream 329385 9439350 ~ 9571464 (-)
G61489 NA non-coding downstream 10654 9088707 ~ 9096874 (-)
LOC117597240 NA non-coding downstream 113422 8993895 ~ 8994106 (-)
LOC117597151 NA non-coding downstream 214473 8888157 ~ 8893055 (-)
G61464 NA non-coding downstream 226792 8879197 ~ 8880736 (-)
G61445 NA non-coding downstream 369048 8728354 ~ 8738480 (-)
G61492 LOC108267340 non-coding upstream 10796 9120761 ~ 9125308 (-)
G61496 NA non-coding upstream 41453 9151418 ~ 9159115 (-)
G61518 NA non-coding upstream 202832 9312797 ~ 9313019 (-)
G61876 NA non-coding upstream 318829 9428794 ~ 9430832 (-)
G61881 NA non-coding upstream 338550 9448515 ~ 9454706 (-)
G61478 NA other downstream 123075 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 511903 8571496 ~ 8595625 (-)
LOC113526822 LOC108268278 other downstream 555673 8452610 ~ 8551855 (-)
LOC117597002 LOC107721237 other downstream 2208301 6881382 ~ 6899227 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 3147983 5900249 ~ 5959545 (-)
LOC113540087 LOC108267275 other upstream 204884 9314849 ~ 9327431 (-)
G61537 NA other upstream 227861 9337826 ~ 9338745 (-)
G61900 NA other upstream 495762 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 666313 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 960441 10070406 ~ 10073229 (-)

Expression


Co-expression Network