LOC117597153


Basic Information

Item Value
gene id LOC117597153
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8833213 ~ 8834025 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578046.1
TGCATCAGACAGACTTCAAGACACCTGGCGCCAATTTAGTTTAATCATGGAGGAGGGAGGAAGTGTGGTGGATGCTTCAACATGCAACAGCTCAAATACAGCACTTCAGCATCCTTGGCCACAATGAAGGAGCTTTTTGCAGTGAAGGCGAAGAAGGGCAATTGTGTCATTATGTCATGTCAGCTTTGCCTGCCTAGACCAGTTGAAATATCGGCATTCAAGAGTTCTTCCTCTAATTTGAAAAAACACATTGAGagaaaacatCCATCGAAATTAAAGCAGTACAATGAATGTgtcttgaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578046.1 True 304 lncRNA 0.42 2 8833213 8834025

Neighbor

gene id symbol gene type direction distance location
si:cabz01074946.1 NA coding upstream 291922 8530188 ~ 8541291 (+)
vangl2 vangl2,LOC108268029,LOC107686095,LOC107707319,LOC106609014 coding upstream 308925 8509133 ~ 8524288 (+)
arhgef11 arhgef11 coding upstream 328560 8465305 ~ 8504653 (+)
LOC113526595 LOC108267854,LOC108436868 coding upstream 476683 8231180 ~ 8356530 (+)
znf830 NA coding upstream 729196 8102405 ~ 8104017 (+)
LOC117597150 LOC107663573 coding downstream 798 8834823 ~ 8836571 (+)
LOC117597148 LOC107663573 coding downstream 153704 8987729 ~ 8991452 (+)
LOC113540089 NA coding downstream 495310 9329335 ~ 9332782 (+)
pnp5a LOC108267282,LOC103368940,LOC107692836,LOC108440276,LOC107747996,LOC107728028 coding downstream 594700 9428725 ~ 9434604 (+)
sf3b2 sf3b2,LOC107692835 coding downstream 793723 9627748 ~ 9641910 (+)
G61350 LOC108267352,LOC108267722 non-coding upstream 9035 8743763 ~ 8824178 (+)
LOC117597155 NA non-coding upstream 27132 8804314 ~ 8806081 (+)
G61347 NA non-coding upstream 32889 8797472 ~ 8800324 (+)
G61175 NA non-coding upstream 506469 8291928 ~ 8326744 (+)
G61176 NA non-coding upstream 537112 8295371 ~ 8296101 (+)
LOC113524706 NA non-coding downstream 76635 8910660 ~ 8915841 (+)
G61377 NA non-coding downstream 165497 8999522 ~ 9050524 (+)
LOC117597154 NA non-coding downstream 333531 9167556 ~ 9169479 (+)
G61519 LOC108267275 non-coding downstream 480834 9314859 ~ 9317134 (+)
G61520 NA non-coding downstream 486136 9320161 ~ 9322444 (+)
LOC117597156 NA other upstream 108773 8695352 ~ 8724440 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other upstream 770374 8056056 ~ 8062839 (+)
LOC113547228 NA other upstream 2128867 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 2236612 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 2689411 6143532 ~ 6143802 (+)
G61359 LOC108267272,LOC108267273 other downstream 60445 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 924435 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 973296 9807321 ~ 9832280 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other downstream 1026869 9860894 ~ 9882713 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other downstream 1333821 10167846 ~ 10266279 (+)

Expression


Co-expression Network