LOC117597156


Basic Information

Item Value
gene id LOC117597156
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8695352 ~ 8724440 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578049.1
CTCCatgtgatgctctTGCTGACGGGACTCATCCACTGCATACCAACAGagagtCCTAAACCTGTGGTGATTATAGAGCCTGATACACAGGtgttcagaggagagagagtgacttTCAGGTGtgacatacagagaggaggagacactGAGTGGACATACAGCTGGAATAAGAATGATTACACACTCTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578049.1 True 189 ncRNA 0.47 3 8695352 8724440

Neighbor

gene id symbol gene type direction distance location
si:cabz01074946.1 NA coding upstream 154061 8530188 ~ 8541291 (+)
vangl2 vangl2,LOC108268029,LOC107686095,LOC107707319,LOC106609014 coding upstream 171064 8509133 ~ 8524288 (+)
arhgef11 arhgef11 coding upstream 190699 8465305 ~ 8504653 (+)
LOC113526595 LOC108267854,LOC108436868 coding upstream 338822 8231180 ~ 8356530 (+)
znf830 NA coding upstream 591335 8102405 ~ 8104017 (+)
LOC117597150 LOC107663573 coding downstream 110383 8834823 ~ 8836571 (+)
LOC117597148 LOC107663573 coding downstream 263289 8987729 ~ 8991452 (+)
LOC113540089 NA coding downstream 604895 9329335 ~ 9332782 (+)
pnp5a LOC108267282,LOC103368940,LOC107692836,LOC108440276,LOC107747996,LOC107728028 coding downstream 704285 9428725 ~ 9434604 (+)
sf3b2 sf3b2,LOC107692835 coding downstream 903308 9627748 ~ 9641910 (+)
G61175 NA non-coding upstream 368608 8291928 ~ 8326744 (+)
G61176 NA non-coding upstream 399251 8295371 ~ 8296101 (+)
G61162 NA non-coding upstream 456870 8218094 ~ 8238482 (+)
G61098 NA non-coding upstream 576501 8117708 ~ 8118851 (+)
G61096 NA non-coding upstream 584909 8109478 ~ 8110443 (+)
G61350 LOC108267352,LOC108267722 non-coding downstream 19323 8743763 ~ 8824178 (+)
G61347 NA non-coding downstream 73032 8797472 ~ 8800324 (+)
LOC117597155 NA non-coding downstream 79874 8804314 ~ 8806081 (+)
LOC117597153 NA non-coding downstream 108773 8833213 ~ 8834025 (+)
LOC113524706 NA non-coding downstream 186220 8910660 ~ 8915841 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other upstream 632513 8056056 ~ 8062839 (+)
LOC113547228 NA other upstream 1991006 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 2098751 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 2551550 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 3099127 5579796 ~ 5596225 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 105 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 170030 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 1034020 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 1082881 9807321 ~ 9832280 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other downstream 1136454 9860894 ~ 9882713 (+)

Expression


Co-expression Network