LOC117597167


Basic Information

Item Value
gene id LOC117597167
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4650477 ~ 4653121 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578071.1
CGTCCACGCACCTTCAACCTGACAGCAGTGATCTACTGTATACAGCCTGCAACAGTTATGAGAATGACATCATGGAGCCTCTCCCACTATTTTCTTAGTTTGGGTCACCAGGTGGCAGACCTTCACCCATTGAACTGCAGAATGGCCTCTGAATCCACCATAATCATGGCCAGGATGGAgcagttgctgaaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578071.1 True 193 ncRNA 0.49 3 4650477 4653121

Neighbor

gene id symbol gene type direction distance location
LOC117597089 NA coding upstream 137014 4463938 ~ 4513463 (+)
LOC113547238 LOC108268217,LOC108268211,LOC108261462,LOC108261482,LOC108261092 coding upstream 163111 4479498 ~ 4487366 (+)
LOC117597057 NA coding upstream 219471 4417549 ~ 4431006 (+)
LOC117597055 LOC108261462,LOC108261092 coding upstream 242091 4395485 ~ 4408386 (+)
LOC113537671 LOC108261092,LOC108261095,LOC108261482,LOC108261096 coding upstream 316310 4315778 ~ 4334167 (+)
mnx1 mnx1,mnx2a,LOC102792706,LOC102297330,LOC101473880,LOC102192758 coding downstream 86449 4739570 ~ 4746302 (+)
LOC113547242 LOC108268241 coding downstream 121065 4774186 ~ 4789253 (+)
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding downstream 152533 4805654 ~ 4866411 (+)
si:ch211-188c16.1 LOC108268214 coding downstream 226679 4879800 ~ 4894423 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding downstream 243847 4896968 ~ 4913622 (+)
G59304 NA non-coding upstream 94878 4555395 ~ 4555599 (+)
LOC117597097 NA non-coding upstream 531887 4117786 ~ 4118590 (+)
G59139 NA non-coding upstream 595247 4054310 ~ 4055230 (+)
G59136 NA non-coding upstream 599229 4047039 ~ 4051248 (+)
G59124 NA non-coding upstream 674506 3975285 ~ 3975971 (+)
G59338 LOC108268240 non-coding downstream 10490 4663611 ~ 4664466 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding downstream 12891 4666012 ~ 4666455 (+)
G59342 NA non-coding downstream 16742 4669863 ~ 4670083 (+)
G59343 NA non-coding downstream 17859 4670980 ~ 4671460 (+)
G59329 NA non-coding downstream 24046 4677167 ~ 4698795 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other upstream 97439 4532921 ~ 4553038 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 256472 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other upstream 354012 4290618 ~ 4296465 (+)
LOC113545588 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108268211,LOC108261305,LOC108268217 other upstream 588963 3739301 ~ 4061514 (+)
LOC113547237 LOC108261305,LOC108268217,LOC108261462,LOC108268211,LOC108261092 other upstream 914154 3728456 ~ 3736323 (+)
G59366 ube3c other downstream 54321 4707442 ~ 4708398 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other downstream 294016 4947137 ~ 4956467 (+)
G59492 LOC108268230,LOC108268219 other downstream 321074 4974195 ~ 5014813 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other downstream 526433 5179554 ~ 5189713 (+)
LOC113547289 LOC108267851 other downstream 735247 5388368 ~ 5391829 (+)

Expression


Co-expression Network