LOC117597176


Basic Information

Item Value
gene id LOC117597176
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5262484 ~ 5265109 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578078.1
GATTTCTCCATAAACCAATCATTTTCCTTTCTGCCCTCAGAATCATTTTGAGTAAGTAAAACTCCCACCTGCGTCACAATACGTTCCACAGCAAGCAGTGACTACAGAAGTTATAAAAGCATCCTGCAAGATGTACTATGAAACTCTGAGGAGTAAATATTTGATGGCCCAGCCTGAAAAAGCTAAGCTGAGAAACTCTGTTAAagctgtggcaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578078.1 True 221 lncRNA 0.39 3 5262484 5265109

Neighbor

gene id symbol gene type direction distance location
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding downstream 112262 5129697 ~ 5150222 (-)
LOC113547224 NA coding downstream 158358 5100415 ~ 5104126 (-)
LOC117597187 LOC108261662 coding downstream 237084 5020107 ~ 5025400 (-)
LOC113547303 LOC108268222 coding downstream 244635 5013348 ~ 5017849 (-)
LOC113547304 LOC108268219 coding downstream 244677 4992589 ~ 5017807 (-)
dnm3b LOC108268313,LOC108413145 coding upstream 43752 5308861 ~ 5357290 (-)
LOC113547296 NA coding upstream 128768 5393877 ~ 5399388 (-)
fggy fggy coding upstream 145713 5410822 ~ 5426769 (-)
tada1 tada1,LOC106569412 coding upstream 170114 5435223 ~ 5442703 (-)
igfbp1b LOC108268024 coding upstream 331181 5596290 ~ 5602267 (-)
G59788 NA non-coding downstream 41798 5192160 ~ 5220686 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding downstream 49826 5179745 ~ 5212658 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding downstream 132865 5122136 ~ 5129619 (-)
G59598 NA non-coding downstream 304563 4957717 ~ 4957921 (-)
G59559 NA non-coding downstream 348033 4870160 ~ 4914451 (-)
G59823 NA non-coding upstream 57392 5322501 ~ 5329901 (-)
G59833 NA non-coding upstream 112944 5378053 ~ 5378280 (-)
G59838 LOC108267851 non-coding upstream 123321 5388430 ~ 5389298 (-)
G59839 LOC108267851 non-coding upstream 124531 5389640 ~ 5391068 (-)
G59843 NA non-coding upstream 142372 5407481 ~ 5412825 (-)
LOC113547297 NA other downstream 176127 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 317463 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 614604 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 690657 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 1006200 4198213 ~ 4256284 (-)
cldn1 LOC108268314 other upstream 213433 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 635140 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1616273 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3187501 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 3306387 8571496 ~ 8595625 (-)

Expression


Co-expression Network