LOC117597182


Basic Information

Item Value
gene id LOC117597182
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14977326 ~ 15011493 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578083.1
TACACAGTTAACGCACACAATTACAAGCGCGCGCTCTGGCAGATTTAAAGCAGTCATCAATTAACGATCAAAATGGCCAAATTTGTTattagaggagaaaaaagatgtGAGGAAAATACTAATGAAGGAACACATGCAAACAAGAAGAGTCGCAGGATCAGCAGTGAAGGTAGGAGAGTGCTTGAAGAAAGGAAGAATCAGTTTGCTGTCCACGAGCGAGATGGACAGCCTTTCTGCTTGCTCTGTAGTAAAGTACTGGGTGTATGCAAAACTTACAATGTCAAAAGACATTTCGATACCACCCATGCCACTTTTGAACAAGAAATATCCACCTGGATCTCAGGAAAGAGCTCTCAAGATAGCTACTCTTGAAAAAAATGCCATTGCTGAACAGAATacaatgctagctagcttaaaagTGTCTCAGGCCGTGACATTAGCAAGGTTCAAAATTTCCTGGCTCCTTGCCAAACACGGCAGACCATTCAGTGATGGGGAGCTAGTTAAGAACTGTTTTCTGGAATCACGACATCAGGTGTCCCGTTAATGgcAGAGTTTCTGACATGCTGGGAAGCTGACAGAAGCAGTGAGAGTCCCAGTGCTGTTTTGTCTGCTGTCTGTTTGGATATGAACGGCAAGCTGAGCCCTAGACAATGATCAACATCCTGAGGagacaGCAGATTTTCATCGGCTCTGCCCAAAATCCTCCATCAGGAAGTGACAGTAAACATAGCATCCTCAATATTTTGGTATGGCCAACCTTGACCTTATTCAGTGACTGTTTGACCATAGCATGCTAACGAATTTGACAGCAAAGttaccaaacaggaagtgagggcatatctcagcaaCAGTGTGATCTACTGAGACCACACTTTGTATGTGACTAAAGGACCATGTTCTAAAGAAACATTGTCTACTAATACCATTGTATTATCAGACCATGCTGGCAAAAACATATTTCTTGGATTTTTGATATTCAACAAAGCTTGTCCATTACATGTGACCAATTTGAACGCAAAGTCACCAAACAGGCTGTGAGGCCATATCTCAGCAAGGACTTTACATTATTTCCatcatttatttagtatatCTTCGTAGGAACCAGCACTGATGGTCCCAATGGCTTCTGGTTTATTTCCATTGTAAAGGGGTGGGGCCATAAAGTGCTTGTCCCCTTAATCATGGCTTcagctatattttatttttcatatttcttttaaaacttGTGTGATGATTGTAGGCTCATGGATTGGGATATCAAAGTCAAATTTATTCAGTTGTCATATATATGACATATTTCCTCACACAGTTATTTTTCTACTA
>XR_004578084.1
TACACAGTTAACGCACACAATTACAAGCGCGCGCTCTGGCAGATTTAAAGCAGTCATCAATTAACGATCAAAATGGCCAAATTTGTTattagaggagaaaaaagatgtGAGGAAAATACTAATGAAGGAACACATGCAAACAAGAAGAGTCGCAGGATCAGCAGTGAAGGTAGGAGAGTGCTTGAAGAAAGGAAGAATCAGTTTGCTGTCCACGAGCGAGATGGACAGCCTTTCTGCTTGCTCTGTAGTAAAGTACTGGGTGTATGCAAAACTTACAATGTCAAAAGACATTTCGATACCACCCATGCCACTTTTGAACAAGAAATATCCACCTGGATCTCAGGAAAGAGCTCTCAAGATAGCTACTCTTGAAAAAAATGCCATTGCTGAACAGAATacaatgctagctagcttaaaagTGTCTCAGGCCGTGACATTAGCAAGGTTCAAAATTTCCTGGCTCCTTGCCAAACACGGCAGACCATTCAGTGATGGGGAGCTAGTTAAGAACTGTTTTCTGGAATCACGACATCAGGTGTCCCGTTAATGgcAGAGTTTCTGACATGCTGGGAAGCTGACAGAAGCAGTGAGAGTCCCAGTGCTGTTTTGTCTGCTGTCTGTTTGGATATGAACGGCAAGCTGAGCCCTAGACAATGATCAACATCCTGAGGagacaGCAGATTTTCATCGGCTCTGCCCAAAATCCTCCATCAGGAAGTGACAGTAAACATAGCATCCTCAATATTTTGGACTGTTTGACCATAGCATGCTAACGAATTTGACAGCAAAGttaccaaacaggaagtgagggcatatctcagcaaCAGTGTGATCTACTGAGACCACACTTTGTATGTGACTAAAGGACCATGTTCTAAAGAAACATTGTCTACTAATACCATTGTATTATCAGACCATGCTGGCAAAAACATATTTCTTGGATTTTTGATATTCAACAAAGCTTGTCCATTACATGTGACCAATTTGAACGCAAAGTCACCAAACAGGCTGTGAGGCCATATCTCAGCAAGGACTTTACATTATTTCCatcatttatttagtatatCTTCGTAGGAACCAGCACTGATGGTCCCAATGGCTTCTGGTTTATTTCCATTGTAAAGGGGTGGGGCCATAAAGTGCTTGTCCCCTTAATCATGGCTTcagctatattttatttttcatatttcttttaaaacttGTGTGATGATTGTAGGCTCATGGATTGGGATATCAAAGTCAAATTTATTCAGTTGTCATATATATGACATATTTCCTCACACAGTTATTTTTCTACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578083.1 True 1326 lncRNA 0.41 5 14977326 15011493
XR_004578084.1 False 1299 lncRNA 0.41 5 14977326 15011493

Neighbor

gene id symbol gene type direction distance location
zmp:0000000660 arap2 coding upstream 8725 14889300 ~ 14968601 (+)
paqr9 paqr9 coding upstream 147415 14824102 ~ 14829911 (+)
adam19a adam19a,LOC108267694,LOC108428568,LOC107708434 coding upstream 215761 14686254 ~ 14761565 (+)
LOC113540153 nwd2,LOC107661962 coding upstream 354802 14576397 ~ 14622524 (+)
LOC113540157 LOC108267639,LOC108428574,LOC101077706 coding upstream 597775 14356048 ~ 14379551 (+)
cckar cckar coding downstream 892862 15904355 ~ 15916921 (+)
plaa plaa,LOC107549730,LOC107661955,LOC107660709 coding downstream 980682 15992175 ~ 16000945 (+)
htra3b htra3,LOC107757896,LOC107707797,LOC107660743,LOC107661977,LOC107549726 coding downstream 1028712 16040205 ~ 16050628 (+)
ttc5 ttc5,LOC107738047,LOC107683587 coding downstream 1074184 16085677 ~ 16092460 (+)
si:ch211-212k18.5 sall2 coding downstream 1087390 16098883 ~ 16107737 (+)
G64673 NA non-coding upstream 214730 14762335 ~ 14762596 (+)
G64668 NA non-coding upstream 296513 14680206 ~ 14680813 (+)
G64462 NA non-coding upstream 680854 14296270 ~ 14296472 (+)
G64459 NA non-coding upstream 682065 14295002 ~ 14295261 (+)
G64308 NA non-coding upstream 920439 14056527 ~ 14056887 (+)
G64963 NA non-coding downstream 189816 15201309 ~ 15201528 (+)
LOC117597190 NA non-coding downstream 494799 15506292 ~ 15556924 (+)
G65115 NA non-coding downstream 857705 15869198 ~ 15870771 (+)
G65170 NA non-coding downstream 989662 16001155 ~ 16001461 (+)
G65184 NA non-coding downstream 1008364 16019857 ~ 16055145 (+)
zgc:194930 LOC108268002 other upstream 318390 14632030 ~ 14658936 (+)
brms1 brms1,LOC108268191,LOC108428539,LOC107661966,LOC107721670,LOC107661087,LOC105894187,LOC107583285 other upstream 707986 14255744 ~ 14269340 (+)
gc2 LOC108267421,LOC108412585 other upstream 1257872 13705417 ~ 13719454 (+)
cited1 cited1 other upstream 1415060 13558623 ~ 13562266 (+)
LOC113539889 LOC108267838 other upstream 1502289 13468552 ~ 13475037 (+)
LOC113540079 sh3tc1 other downstream 1011701 16023194 ~ 16039984 (+)
LOC113539780 LOC108268335,LOC108434603,LOC107731925,LOC107595313,LOC793560,LOC107675495,LOC107683530,LOC107738035 other downstream 1298720 16310213 ~ 16319166 (+)
LOC113540582 cyb5d1,LOC108267266,LOC108434590,LOC107738084,LOC107683579,LOC106577649,LOC105907155,LOC107595290,LOC107707052,LOC107702060 other downstream 1356463 16367956 ~ 16370957 (+)
arrb2b arrb2,arrb2b,LOC108434652,LOC108267683,LOC105904870,LOC101076921,LOC107750580,LOC107593814,LOC107561939 other downstream 2324004 17335497 ~ 17401388 (+)
LOC113539940 NA other downstream 2597999 17609492 ~ 17620079 (+)

Expression


Co-expression Network