LOC113547253


Basic Information

Item Value
gene id LOC113547253
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6622836 ~ 6623651 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578118.1
CAGGAAGCATCACTATATAAACATTACCACGTACCTGAGTATGTTACATCAAGCAAGAAGAGACTCCTGATTAGATGTTAGTGGAATTTTGATGAGaaaCACTGTCTGAATCTCGATGCACACTTGATCTCAATACACAGCGAAAATGAATATCAGCTGGTTAAGGCTCTTATCCGTGCTCATGACCCCCAGGAGAATCCAACATGGATCGGCCTCAGTGGCTGTCAGAAGAGGAATAACTGTTTTTGGTCTGATGGCACCAAACTGACTTTCACCAAGTGGAATCCAGGCAGTAAGAACTGGAATGACATTCTGTGCGATCGGTGCTATCCCTTTATGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578118.1 True 343 lncRNA 0.44 4 6622836 6623651

Neighbor

gene id symbol gene type direction distance location
dhx30 dhx30 coding upstream 20425 6580355 ~ 6602411 (+)
LOC113547283 NA coding upstream 45934 6572068 ~ 6576902 (+)
wrnip1 wrnip1 coding upstream 50759 6550985 ~ 6572077 (+)
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding upstream 417946 6202522 ~ 6204890 (+)
foxf2a LOC108267118 coding upstream 445677 6171029 ~ 6177159 (+)
LOC113547232 LOC108262378 coding downstream 20877 6644528 ~ 6683316 (+)
LOC113547277 NA coding downstream 84730 6708381 ~ 6713301 (+)
LOC113547278 NA coding downstream 90156 6713807 ~ 6719716 (+)
LOC113547276 NA coding downstream 109933 6733584 ~ 6737199 (+)
gpaa1 gpaa1,LOC107671733 coding downstream 116922 6740573 ~ 6755800 (+)
trnar-ucu_1 NA non-coding upstream 192259 6430486 ~ 6430577 (+)
G60384 NA non-coding upstream 196492 6426119 ~ 6426344 (+)
G60362 NA non-coding upstream 208823 6413800 ~ 6414013 (+)
G60312 NA non-coding upstream 242374 6380245 ~ 6380462 (+)
LOC117596997 NA non-coding upstream 317274 6301325 ~ 6305562 (+)
LOC113547233 NA non-coding downstream 25131 6648782 ~ 6651846 (+)
G60529 NA non-coding downstream 165569 6789220 ~ 6797109 (+)
LOC113527002 NA non-coding downstream 178805 6802456 ~ 6805176 (+)
G60536 NA non-coding downstream 186515 6810166 ~ 6812401 (+)
G60548 NA non-coding downstream 253380 6877031 ~ 6895222 (+)
LOC117597080 NA other upstream 26235 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 479034 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 1026611 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 1231007 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 1433123 5179554 ~ 5189713 (+)
LOC113547228 NA other downstream 60685 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1432405 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2071701 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2100894 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 2270819 8894470 ~ 8896729 (+)

Expression


Co-expression Network