LOC117597212


Basic Information

Item Value
gene id LOC117597212
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9506444 ~ 9506654 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578120.1
GTGATTATACTTTTATGAATCTTTGTATAGTGTCTCCTTAAGAAATGTGGTTTGAAAATCTTAGTTGTCTCTAATCACAATGATGAGTTTGATGCTCTCTTCTGATCATTGCTCAGGTTCTGGTTATTGATTCTTTAATGAGCTTTAACCATTGATGAATGTTTCCTACTTCTTATGAAGTATTGGTGGGAGAGAGAATGATCAGAGGGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578120.1 True 211 lncRNA 0.34 1 9506444 9506654

Neighbor

gene id symbol gene type direction distance location
LOC113539885 LOC100379168 coding downstream 21843 9474177 ~ 9484601 (-)
dusp19b dus19 coding downstream 68477 9435134 ~ 9437967 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding downstream 93531 9391003 ~ 9412913 (-)
LOC113540032 NA coding downstream 116963 9383985 ~ 9389481 (-)
LOC117597149 NA coding downstream 129432 9368722 ~ 9377012 (-)
zgc:101810 zgc:101810,LOC108267909,LOC108440263,LOC103038739,LOC107747924,LOC107692827,LOC107377040,LOC105026763 coding upstream 376057 9882711 ~ 9889757 (-)
six7 LOC108267910,LOC108440264,LOC105902948,LOC107567605,LOC105026762,LOC102308987,LOC101481621,LOC107748082,LOC107553799,LOC105933590,LOC103360578 coding upstream 385697 9892351 ~ 9896258 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding upstream 400905 9907559 ~ 9911772 (-)
pfdn2 pfdn2,LOC107745204 coding upstream 407580 9914234 ~ 9919791 (-)
mfap3l mfap3l coding upstream 465729 9972383 ~ 9980666 (-)
LOC117597233 NA non-coding downstream 3170 9503062 ~ 9503274 (-)
LOC117597234 NA non-coding downstream 6513 9499719 ~ 9499931 (-)
G61881 NA non-coding downstream 51738 9448515 ~ 9454706 (-)
G61876 NA non-coding downstream 75612 9428794 ~ 9430832 (-)
G61518 NA non-coding downstream 193425 9312797 ~ 9313019 (-)
LOC117597224 NA non-coding upstream 381 9507035 ~ 9507242 (-)
LOC117597214 NA non-coding upstream 1424 9508078 ~ 9508282 (-)
LOC117597246 NA non-coding upstream 2052 9508706 ~ 9508916 (-)
LOC113540730 NA non-coding upstream 3098 9509752 ~ 9509963 (-)
LOC117597223 NA non-coding upstream 3747 9510401 ~ 9516883 (-)
G61537 NA other downstream 167699 9337826 ~ 9338745 (-)
LOC113540087 LOC108267275 other downstream 179013 9314849 ~ 9327431 (-)
G61478 NA other downstream 521991 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 910819 8571496 ~ 8595625 (-)
LOC113526822 LOC108268278 other downstream 954589 8452610 ~ 8551855 (-)
G61900 NA other upstream 99073 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 269624 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 563752 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 572034 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 980014 10486668 ~ 10486741 (-)

Expression


Co-expression Network