LOC117597221


Basic Information

Item Value
gene id LOC117597221
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9582884 ~ 9583090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578127.1
AAGATTATACTTTCAgggatcatttctatagtgtcTAACTaggaaatgtgatttgaaaGTGTTGTGTCTCTCTAACCGCAATGATGAGTTTTGATGCACTCTTCTGAACATGAATCAGGTTTTGGCTAATGATTCTTTCATGAGCTTTAATCTTTGATGAATGTTCTCTATTTTTTATAGAGAGGAAGAGTGCATGATCTGAGTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578127.1 True 207 lncRNA 0.35 1 9582884 9583090

Neighbor

gene id symbol gene type direction distance location
capn1 capn1,LOC108267277,LOC108440273,LOC107728026,LOC106608991 coding downstream 11420 9439350 ~ 9571464 (-)
LOC113539885 LOC100379168 coding downstream 98283 9474177 ~ 9484601 (-)
dusp19b dus19 coding downstream 144917 9435134 ~ 9437967 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding downstream 169971 9391003 ~ 9412913 (-)
LOC113540032 NA coding downstream 193403 9383985 ~ 9389481 (-)
zgc:101810 zgc:101810,LOC108267909,LOC108440263,LOC103038739,LOC107747924,LOC107692827,LOC107377040,LOC105026763 coding upstream 299621 9882711 ~ 9889757 (-)
six7 LOC108267910,LOC108440264,LOC105902948,LOC107567605,LOC105026762,LOC102308987,LOC101481621,LOC107748082,LOC107553799,LOC105933590,LOC103360578 coding upstream 309261 9892351 ~ 9896258 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding upstream 324469 9907559 ~ 9911772 (-)
pfdn2 pfdn2,LOC107745204 coding upstream 331144 9914234 ~ 9919791 (-)
mfap3l mfap3l coding upstream 389293 9972383 ~ 9980666 (-)
LOC117597217 NA non-coding downstream 1307 9581373 ~ 9581577 (-)
LOC113540708 NA non-coding downstream 1868 9580810 ~ 9581016 (-)
LOC113540721 NA non-coding downstream 2643 9580024 ~ 9580241 (-)
LOC113540714 NA non-coding downstream 4374 9578298 ~ 9578510 (-)
LOC117597237 NA non-coding downstream 7724 9574947 ~ 9575160 (-)
LOC117597213 NA non-coding upstream 853 9583943 ~ 9584147 (-)
LOC117597243 NA non-coding upstream 1699 9584789 ~ 9584996 (-)
LOC117597244 NA non-coding upstream 4523 9587613 ~ 9587824 (-)
LOC117597219 NA non-coding upstream 5111 9588201 ~ 9588406 (-)
LOC117597238 NA non-coding upstream 6977 9590067 ~ 9590279 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 54059 8639468 ~ 9528825 (-)
G61537 NA other downstream 244139 9337826 ~ 9338745 (-)
LOC113540087 LOC108267275 other downstream 255453 9314849 ~ 9327431 (-)
G61478 NA other downstream 598431 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 987259 8571496 ~ 8595625 (-)
G61900 NA other upstream 22637 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 193188 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 487316 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 495598 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 903578 10486668 ~ 10486741 (-)

Expression


Co-expression Network