LOC117597227


Basic Information

Item Value
gene id LOC117597227
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10040482 ~ 10040694 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578135.1
AAGACTATACTTTCAGGGATCATTTCTATAGTTTCTAACTaggaaatgtgatttgaaaGCGTTATGTCTCTCTAATCACAATGATGAGCTTTGATGTATTTCTCTGAGCGTGAATCGGATTTTAGCTAGTGATTTTGTCATGAGCTTTAATCATTGATGAATGTTCTCTGTTTCTTATGGAACATGAGAGGAGAAGTACATGGTCAGAGTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578135.1 True 213 lncRNA 0.35 1 10040482 10040694

Neighbor

gene id symbol gene type direction distance location
intu intu coding downstream 16705 9997315 ~ 10023777 (-)
aadat aadat,LOC102781018 coding downstream 47615 9980997 ~ 9992867 (-)
mfap3l mfap3l coding downstream 59816 9972383 ~ 9980666 (-)
pfdn2 pfdn2,LOC107745204 coding downstream 120691 9914234 ~ 9919791 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding downstream 128710 9907559 ~ 9911772 (-)
trmt10b trmt10b coding upstream 5878 10046572 ~ 10053214 (-)
LOC113540363 NA coding upstream 53053 10093747 ~ 10095116 (-)
LOC113540311 LOC108267981 coding upstream 55085 10095779 ~ 10106529 (-)
LOC117597105 LOC108267929 coding upstream 70468 10111162 ~ 10143429 (-)
LOC113538503 LOC108261535 coding upstream 127223 10167917 ~ 10189928 (-)
LOC113540709 NA non-coding downstream 895 10039380 ~ 10039587 (-)
LOC113540720 NA non-coding downstream 1716 10038554 ~ 10038766 (-)
LOC117596979 NA non-coding downstream 2499 10026874 ~ 10037983 (-)
LOC117597222 NA non-coding downstream 3125 10037145 ~ 10037357 (-)
LOC117597220 NA non-coding downstream 9388 10030882 ~ 10031094 (-)
LOC113540700 NA non-coding upstream 873 10041567 ~ 10041779 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding upstream 161537 10202231 ~ 10211232 (-)
G62108 LOC108267978,LOC108411458 non-coding upstream 323318 10364012 ~ 10364892 (-)
G62109 LOC108267978 non-coding upstream 327627 10368321 ~ 10370563 (-)
G62125 NA non-coding upstream 434076 10474770 ~ 10483928 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 235164 9776278 ~ 9805318 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 511657 8639468 ~ 9528825 (-)
cxcl19 LOC108267987 other upstream 29712 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 37994 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 445974 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 449654 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 450896 10491590 ~ 10491663 (-)

Expression


Co-expression Network