LOC117597230


Basic Information

Item Value
gene id LOC117597230
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9615995 ~ 9616207 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578138.1
AAGACTATACTTTCAGGGATCATTTCTATAGTTTCTGACTAGGAAATGTGATTTGAAGGTGTTGTGTCTCCCTAATCACAATGATGAGTTTTGATGTGCTTTTCTGAACATGAATCAGATTCAAGCTGTTGTTTCTTTCATGAGCTTTAATCCTTGAAGAATGTTCTTCACTTTTTGAAAAGTGTGAGAGGAAAAGCACATGATCAGAGTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578138.1 True 213 lncRNA 0.35 1 9615995 9616207

Neighbor

gene id symbol gene type direction distance location
capn1 capn1,LOC108267277,LOC108440273,LOC107728026,LOC106608991 coding downstream 44531 9439350 ~ 9571464 (-)
LOC113539885 LOC100379168 coding downstream 131394 9474177 ~ 9484601 (-)
dusp19b dus19 coding downstream 178028 9435134 ~ 9437967 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding downstream 203082 9391003 ~ 9412913 (-)
LOC113540032 NA coding downstream 226514 9383985 ~ 9389481 (-)
zgc:101810 zgc:101810,LOC108267909,LOC108440263,LOC103038739,LOC107747924,LOC107692827,LOC107377040,LOC105026763 coding upstream 266504 9882711 ~ 9889757 (-)
six7 LOC108267910,LOC108440264,LOC105902948,LOC107567605,LOC105026762,LOC102308987,LOC101481621,LOC107748082,LOC107553799,LOC105933590,LOC103360578 coding upstream 276144 9892351 ~ 9896258 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding upstream 291352 9907559 ~ 9911772 (-)
pfdn2 pfdn2,LOC107745204 coding upstream 298027 9914234 ~ 9919791 (-)
mfap3l mfap3l coding upstream 356176 9972383 ~ 9980666 (-)
LOC117597228 NA non-coding downstream 1935 9613854 ~ 9614060 (-)
LOC117597239 NA non-coding downstream 2515 9613268 ~ 9613480 (-)
G61899 NA non-coding downstream 2535 9604576 ~ 9613460 (-)
LOC113540715 NA non-coding upstream 4008 9620215 ~ 9620426 (-)
LOC113540706 NA non-coding upstream 4506 9620713 ~ 9620919 (-)
G61934 pacs1,LOC108440271,LOC103376102 non-coding upstream 67823 9684030 ~ 9723952 (-)
G61967 ccs non-coding upstream 134614 9750821 ~ 9752285 (-)
G62023 NA non-coding upstream 311126 9927333 ~ 9939105 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 87170 8639468 ~ 9528825 (-)
G61537 NA other downstream 277250 9337826 ~ 9338745 (-)
LOC113540087 LOC108267275 other downstream 288564 9314849 ~ 9327431 (-)
G61478 NA other downstream 631542 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 1020370 8571496 ~ 8595625 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 160071 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 454199 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 462481 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 870461 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 874141 10490348 ~ 10490421 (-)

Expression


Co-expression Network