LOC117597234



Basic Information


Item Value
gene id LOC117597234
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9499719 ~ 9499931 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XR_004578142.1
AAGACTATACTTTCAGGGATCTTTTCTATAGTGTCTAACTGGGAAATGTGATTTGAAAGTGTTGTGTCTTTCTAACCACAATGATGAGTTTTGATGCTCTCTTCTGAACATGAATCAGGTTTTGGCTAATGATTTGTTCATAGGCTTTAACCTTTGATGAATGTTCTCTACTTCTTATGAGGTAGGGGTAGAAGAGTACATGGTCAGAGTGTT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_004578142.1 True 213 lncRNA 0.37 1 9499719 9499931

Neighbor


gene id symbol gene type direction distance location
LOC113539885 LOC100379168 coding downstream 15118 9474177 ~ 9484601 (-)
dusp19b dus19 coding downstream 61752 9435134 ~ 9437967 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding downstream 86806 9391003 ~ 9412913 (-)
LOC113540032 NA coding downstream 110238 9383985 ~ 9389481 (-)
LOC117597149 NA coding downstream 122707 9368722 ~ 9377012 (-)
zgc:101810 zgc:101810,LOC108267909,LOC108440263,LOC103038739,LOC107747924,LOC107692827,LOC107377040,LOC105026763 coding upstream 382780 9882711 ~ 9889757 (-)
six7 LOC108267910,LOC108440264,LOC105902948,LOC107567605,LOC105026762,LOC102308987,LOC101481621,LOC107748082,LOC107553799,LOC105933590,LOC103360578 coding upstream 392420 9892351 ~ 9896258 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding upstream 407628 9907559 ~ 9911772 (-)
pfdn2 pfdn2,LOC107745204 coding upstream 414303 9914234 ~ 9919791 (-)
mfap3l mfap3l coding upstream 472452 9972383 ~ 9980666 (-)
G61881 NA non-coding downstream 45013 9448515 ~ 9454706 (-)
G61876 NA non-coding downstream 68887 9428794 ~ 9430832 (-)
G61518 NA non-coding downstream 186700 9312797 ~ 9313019 (-)
G61496 NA non-coding downstream 340604 9151418 ~ 9159115 (-)
G61492 LOC108267340 non-coding downstream 374411 9120761 ~ 9125308 (-)
LOC117597233 NA non-coding upstream 3131 9503062 ~ 9503274 (-)
LOC117597212 NA non-coding upstream 6513 9506444 ~ 9506654 (-)
LOC117597224 NA non-coding upstream 7104 9507035 ~ 9507242 (-)
LOC117597214 NA non-coding upstream 8147 9508078 ~ 9508282 (-)
LOC117597246 NA non-coding upstream 8775 9508706 ~ 9508916 (-)
G61537 NA other downstream 160974 9337826 ~ 9338745 (-)
LOC113540087 LOC108267275 other downstream 172288 9314849 ~ 9327431 (-)
G61478 NA other downstream 515266 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 904094 8571496 ~ 8595625 (-)
LOC113526822 LOC108268278 other downstream 947864 8452610 ~ 8551855 (-)
G61900 NA other upstream 105796 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 276347 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 570475 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 578757 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 986737 10486668 ~ 10486741 (-)

Expression



Co-expression Network