LOC117597241


Basic Information

Item Value
gene id LOC117597241
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9512088 ~ 9512300 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578150.1
AAGACTATACTTTCAGGGATCATTTCTATAGTTTTTAACTAGGCAATATAATTTGATGGTGTTGTGTCTCTATAATTGCAATGATGAGGTTTGATGTGCTCTTCTGAGTATGAATCAGATTAAAGCTGTTGTTTCTTTTGATTGCTTTAATCCTTGATGAAGGTTCTTCCCTTTTTAGGAAGTGTAAGAGGATGAGTACATGATCAGAGTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578150.1 True 213 lncRNA 0.34 1 9512088 9512300

Neighbor

gene id symbol gene type direction distance location
LOC113539885 LOC100379168 coding downstream 27487 9474177 ~ 9484601 (-)
dusp19b dus19 coding downstream 74121 9435134 ~ 9437967 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding downstream 99175 9391003 ~ 9412913 (-)
LOC113540032 NA coding downstream 122607 9383985 ~ 9389481 (-)
LOC117597149 NA coding downstream 135076 9368722 ~ 9377012 (-)
zgc:101810 zgc:101810,LOC108267909,LOC108440263,LOC103038739,LOC107747924,LOC107692827,LOC107377040,LOC105026763 coding upstream 370411 9882711 ~ 9889757 (-)
six7 LOC108267910,LOC108440264,LOC105902948,LOC107567605,LOC105026762,LOC102308987,LOC101481621,LOC107748082,LOC107553799,LOC105933590,LOC103360578 coding upstream 380051 9892351 ~ 9896258 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding upstream 395259 9907559 ~ 9911772 (-)
pfdn2 pfdn2,LOC107745204 coding upstream 401934 9914234 ~ 9919791 (-)
mfap3l mfap3l coding upstream 460083 9972383 ~ 9980666 (-)
LOC113540730 NA non-coding downstream 2125 9509752 ~ 9509963 (-)
LOC117597246 NA non-coding downstream 3172 9508706 ~ 9508916 (-)
LOC117597214 NA non-coding downstream 3806 9508078 ~ 9508282 (-)
LOC117597224 NA non-coding downstream 4846 9507035 ~ 9507242 (-)
LOC117597212 NA non-coding downstream 5434 9506444 ~ 9506654 (-)
LOC113540704 NA non-coding upstream 375 9512675 ~ 9512881 (-)
LOC113540716 NA non-coding upstream 2569 9514869 ~ 9515080 (-)
LOC113540724 NA non-coding upstream 3681 9515981 ~ 9516191 (-)
LOC113540711 NA non-coding upstream 4151 9516451 ~ 9516658 (-)
LOC117597236 NA non-coding upstream 20540 9532840 ~ 9533044 (-)
G61537 NA other downstream 173343 9337826 ~ 9338745 (-)
LOC113540087 LOC108267275 other downstream 184657 9314849 ~ 9327431 (-)
G61478 NA other downstream 527635 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 916463 8571496 ~ 8595625 (-)
LOC113526822 LOC108268278 other downstream 960233 8452610 ~ 8551855 (-)
G61900 NA other upstream 93427 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 263978 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 558106 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 566388 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 974368 10486668 ~ 10486741 (-)

Expression


Co-expression Network