LOC117597244


Basic Information

Item Value
gene id LOC117597244
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9587613 ~ 9587824 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578153.1
atgattATACTTTTATGAATCTTTGTATAGTGTCTCACTaggaaatgtgatttgaaaAATATTAGTTCTTTCTAACCACAATGATGAGTTTTGATGCTCTCTTCTGATCATGAATCAGGTTCTGGTTATTGATTCTTTAATGAGCTTTAACCATTGATGAATGTTTCCTACTTCTTAAGAAGTGTTGGTGGAGAGAGAATGATCAGAGTGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578153.1 True 212 lncRNA 0.33 1 9587613 9587824

Neighbor

gene id symbol gene type direction distance location
capn1 capn1,LOC108267277,LOC108440273,LOC107728026,LOC106608991 coding downstream 16149 9439350 ~ 9571464 (-)
LOC113539885 LOC100379168 coding downstream 103012 9474177 ~ 9484601 (-)
dusp19b dus19 coding downstream 149646 9435134 ~ 9437967 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding downstream 174700 9391003 ~ 9412913 (-)
LOC113540032 NA coding downstream 198132 9383985 ~ 9389481 (-)
zgc:101810 zgc:101810,LOC108267909,LOC108440263,LOC103038739,LOC107747924,LOC107692827,LOC107377040,LOC105026763 coding upstream 294887 9882711 ~ 9889757 (-)
six7 LOC108267910,LOC108440264,LOC105902948,LOC107567605,LOC105026762,LOC102308987,LOC101481621,LOC107748082,LOC107553799,LOC105933590,LOC103360578 coding upstream 304527 9892351 ~ 9896258 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding upstream 319735 9907559 ~ 9911772 (-)
pfdn2 pfdn2,LOC107745204 coding upstream 326410 9914234 ~ 9919791 (-)
mfap3l mfap3l coding upstream 384559 9972383 ~ 9980666 (-)
LOC117597243 NA non-coding downstream 2617 9584789 ~ 9584996 (-)
LOC117597213 NA non-coding downstream 3466 9583943 ~ 9584147 (-)
LOC117597221 NA non-coding downstream 4523 9582884 ~ 9583090 (-)
LOC117597217 NA non-coding downstream 6036 9581373 ~ 9581577 (-)
LOC113540708 NA non-coding downstream 6597 9580810 ~ 9581016 (-)
LOC117597219 NA non-coding upstream 377 9588201 ~ 9588406 (-)
LOC117597238 NA non-coding upstream 2243 9590067 ~ 9590279 (-)
LOC117597226 NA non-coding upstream 3457 9591281 ~ 9591488 (-)
LOC117597211 NA non-coding upstream 4565 9592389 ~ 9592600 (-)
LOC113540727 NA non-coding upstream 5448 9593272 ~ 9593483 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 58788 8639468 ~ 9528825 (-)
G61537 NA other downstream 248868 9337826 ~ 9338745 (-)
LOC113540087 LOC108267275 other downstream 260182 9314849 ~ 9327431 (-)
G61478 NA other downstream 603160 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 991988 8571496 ~ 8595625 (-)
G61900 NA other upstream 17903 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 188454 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 482582 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 490864 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 898844 10486668 ~ 10486741 (-)

Expression


Co-expression Network