trnag-ucc_13


Basic Information

Item Value
gene id trnag-ucc_13
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 2791873 ~ 2791944 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnag-ucc_13
GCATTGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTtgacccgggttcgattcctggccaatGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnag-ucc_13 True 72 tRNA 0.54 1 2791873 2791944

Neighbor

gene id symbol gene type direction distance location
trnar-ucu NA coding downstream 4100 2787702 ~ 2787773 (-)
trnag-ucc_12 NA coding downstream 9525 2782277 ~ 2782348 (-)
LOC117597045 NA coding downstream 24352 2765518 ~ 2767521 (-)
trnag-ucc_11 NA coding downstream 40604 2751198 ~ 2751269 (-)
trnag-ucc_10 NA coding downstream 50045 2741757 ~ 2741828 (-)
trnag-ucc_14 NA coding upstream 10035 2801979 ~ 2802050 (-)
ccdc96 NA coding upstream 12551 2804495 ~ 2811641 (-)
LOC113524014 NA coding upstream 43333 2835277 ~ 2841271 (-)
ncapg2 ncapg2 coding upstream 668928 3460872 ~ 3486351 (-)
LOC117597049 ncapg2 coding upstream 734549 3526493 ~ 3534819 (-)
G58648 NA non-coding downstream 173080 2607752 ~ 2618793 (-)
G58650 NA non-coding downstream 174444 2611416 ~ 2617429 (-)
G58645 NA non-coding downstream 181621 2604477 ~ 2610252 (-)
G58628 NA non-coding downstream 224069 2535115 ~ 2567804 (-)
G58598 NA non-coding downstream 389569 2376593 ~ 2402304 (-)
G58703 NA non-coding upstream 39228 2831172 ~ 2831373 (-)
G58704 grpel1 non-coding upstream 40734 2832678 ~ 2834631 (-)
LOC113524008 NA non-coding upstream 52636 2844580 ~ 2853974 (-)
G58809 NA non-coding upstream 237759 3029703 ~ 3084722 (-)
G58832 NA non-coding upstream 281229 3073173 ~ 3073765 (-)
trnag-ucc_9 NA other downstream 65589 2680581 ~ 2726284 (-)
trnag-ucc_8 NA other downstream 75772 2716030 ~ 2716101 (-)
trnag-ucc_7 NA other downstream 81675 2710127 ~ 2710198 (-)
trnag-ucc_6 NA other downstream 85751 2706051 ~ 2706122 (-)
trnag-ucc_5 NA other downstream 111027 2680775 ~ 2680846 (-)
G58696 NA other upstream 23046 2814990 ~ 2817550 (-)
LOC113523993 LOC108261096,LOC108261462,LOC108261092 other upstream 316110 3108054 ~ 3115054 (-)
ptprn2 ptprn2 other upstream 431953 3223897 ~ 3457803 (-)
G59069 NA other upstream 794839 3586783 ~ 3590737 (-)
si:ch73-174h16.4 LOC108268225 other upstream 838044 3629988 ~ 3639208 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnag-ucc-320 NA coding NW_023493820.1 JAAXML020000266.1 17691 ~ 17762 (-)