trnak-cuu_10


Basic Information

Item Value
gene id trnak-cuu_10
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10481982 ~ 10482054 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnak-cuu_10
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnak-cuu_10 True 73 tRNA 0.62 1 10481982 10482054

Neighbor

gene id symbol gene type direction distance location
trnak-cuu_9 NA coding upstream 1163 10480747 ~ 10480819 (+)
trnak-cuu_8 NA coding upstream 2382 10479529 ~ 10479600 (+)
trnak-cuu_7 NA coding upstream 3608 10478302 ~ 10478374 (+)
trnak-cuu_6 NA coding upstream 4820 10477089 ~ 10477162 (+)
trnak-cuu_5 NA coding upstream 6053 10475857 ~ 10475929 (+)
LOC117597108 NA coding downstream 435 10482489 ~ 10484147 (+)
trnak-cuu_11 NA coding downstream 1160 10483214 ~ 10483286 (+)
trnak-cuu_12 NA coding downstream 2390 10484444 ~ 10484517 (+)
rgp1 rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996 coding downstream 80178 10562232 ~ 10569484 (+)
trnak-cuu_21 NA coding downstream 83599 10565653 ~ 10565724 (+)
G61842 NA non-coding upstream 123018 10357814 ~ 10358964 (+)
G61785 LOC108267738,LOC108267740,LOC108267935,LOC108267929 non-coding upstream 184418 10165529 ~ 10297564 (+)
LOC117596987 NA non-coding upstream 191298 10289874 ~ 10290684 (+)
LOC113540370 NA non-coding upstream 385914 10024585 ~ 10096068 (+)
G62131 NA non-coding downstream 15076 10497130 ~ 10497360 (+)
LOC117596986 NA non-coding downstream 17221 10499275 ~ 10506477 (+)
trnan-guu_13 NA non-coding downstream 48917 10530971 ~ 10531044 (+)
trnak-cuu_20 NA non-coding downstream 49402 10531456 ~ 10531528 (+)
LOC117596985 NA non-coding downstream 333696 10815750 ~ 10816552 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other upstream 215703 10167846 ~ 10266279 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other upstream 599269 9860894 ~ 9882713 (+)
gal3st3 gal3st3 other upstream 649702 9807321 ~ 9832280 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other upstream 707933 9758460 ~ 9774049 (+)
G61359 LOC108267272,LOC108267273 other upstream 1585253 8894470 ~ 8896729 (+)
trnak-cuu_14 NA other downstream 4848 10486902 ~ 10486974 (+)
trnak-cuu_15 NA other downstream 6086 10488140 ~ 10488212 (+)
trnak-cuu_16 NA other downstream 7311 10489365 ~ 10489436 (+)
trnak-cuu_17 NA other downstream 8524 10490578 ~ 10490650 (+)
trnak-cuu_18 NA other downstream 9743 10491797 ~ 10491869 (+)

Expression


Co-expression Network