trnak-cuu_20


Basic Information

Item Value
gene id trnak-cuu_20
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10531456 ~ 10531528 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnak-cuu_20
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnak-cuu_20 True 73 tRNA 0.62 1 10531456 10531528

Neighbor

gene id symbol gene type direction distance location
trnak-cuu_12 NA coding upstream 46939 10484444 ~ 10484517 (+)
LOC117597108 NA coding upstream 47309 10482489 ~ 10484147 (+)
trnak-cuu_11 NA coding upstream 48170 10483214 ~ 10483286 (+)
trnak-cuu_10 NA coding upstream 49402 10481982 ~ 10482054 (+)
trnak-cuu_9 NA coding upstream 50637 10480747 ~ 10480819 (+)
rgp1 rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996 coding downstream 30704 10562232 ~ 10569484 (+)
trnak-cuu_21 NA coding downstream 34125 10565653 ~ 10565724 (+)
pik3c3 pik3c3,LOC107691920,LOC107562280 coding downstream 43395 10574923 ~ 10595122 (+)
faah2b LOC108267965 coding downstream 104177 10635705 ~ 10644751 (+)
nat8l nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165 coding downstream 147729 10679257 ~ 10689652 (+)
trnan-guu_13 NA non-coding upstream 412 10530971 ~ 10531044 (+)
LOC117596986 NA non-coding upstream 24979 10499275 ~ 10506477 (+)
G62131 NA non-coding upstream 34096 10497130 ~ 10497360 (+)
G61842 NA non-coding upstream 172492 10357814 ~ 10358964 (+)
G61785 LOC108267738,LOC108267740,LOC108267935,LOC108267929 non-coding upstream 233892 10165529 ~ 10297564 (+)
LOC117596985 NA non-coding downstream 284222 10815750 ~ 10816552 (+)
G62373 NA non-coding downstream 333127 10864655 ~ 10864861 (+)
G62416 NA non-coding downstream 375497 10907025 ~ 10910142 (+)
LOC113540371 NA non-coding downstream 488605 11020133 ~ 11022796 (+)
G62549 NA non-coding downstream 645501 11177029 ~ 11193851 (+)
trnak-cuu_19 NA other upstream 35986 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 39587 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 40806 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 42020 10489365 ~ 10489436 (+)
trnak-cuu_15 NA other upstream 43244 10488140 ~ 10488212 (+)
c4h4orf48 c7h4orf48 other downstream 125829 10657357 ~ 10663411 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 1059187 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 1113373 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1760963 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2675129 13206657 ~ 13219859 (+)

Expression


Co-expression Network