trnak-cuu_21


Basic Information

Item Value
gene id trnak-cuu_21
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10565653 ~ 10565724 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnak-cuu_21
tccctagaggactagtggttaggccacagcactcttACTGCTgcagcccgggttcgattcccggccagggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnak-cuu_21 True 72 tRNA 0.60 1 10565653 10565724

Neighbor

gene id symbol gene type direction distance location
trnak-cuu_12 NA coding upstream 81136 10484444 ~ 10484517 (+)
LOC117597108 NA coding upstream 81506 10482489 ~ 10484147 (+)
trnak-cuu_11 NA coding upstream 82367 10483214 ~ 10483286 (+)
trnak-cuu_10 NA coding upstream 83599 10481982 ~ 10482054 (+)
trnak-cuu_9 NA coding upstream 84834 10480747 ~ 10480819 (+)
pik3c3 pik3c3,LOC107691920,LOC107562280 coding downstream 9199 10574923 ~ 10595122 (+)
faah2b LOC108267965 coding downstream 69981 10635705 ~ 10644751 (+)
nat8l nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165 coding downstream 113533 10679257 ~ 10689652 (+)
ptgr1 ptgr1,LOC108267959,LOC107588162,LOC107753922,LOC107668743,LOC107691929,LOC107562349 coding downstream 189153 10754877 ~ 10760025 (+)
si:dkey-11k2.7 ptgr1,LOC108440055 coding downstream 197851 10763575 ~ 10770209 (+)
trnak-cuu_20 NA non-coding upstream 34125 10531456 ~ 10531528 (+)
trnan-guu_13 NA non-coding upstream 34609 10530971 ~ 10531044 (+)
LOC117596986 NA non-coding upstream 59176 10499275 ~ 10506477 (+)
G62131 NA non-coding upstream 68293 10497130 ~ 10497360 (+)
G61842 NA non-coding upstream 206689 10357814 ~ 10358964 (+)
LOC117596985 NA non-coding downstream 250026 10815750 ~ 10816552 (+)
G62373 NA non-coding downstream 298931 10864655 ~ 10864861 (+)
G62416 NA non-coding downstream 341301 10907025 ~ 10910142 (+)
LOC113540371 NA non-coding downstream 454409 11020133 ~ 11022796 (+)
G62549 NA non-coding downstream 611305 11177029 ~ 11193851 (+)
trnak-cuu_19 NA other upstream 70183 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 73784 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 75003 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 76217 10489365 ~ 10489436 (+)
trnak-cuu_15 NA other upstream 77441 10488140 ~ 10488212 (+)
c4h4orf48 c7h4orf48 other downstream 91633 10657357 ~ 10663411 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 1024991 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 1079177 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1726767 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2640933 13206657 ~ 13219859 (+)

Expression


Co-expression Network