XLOC_005310 (csdc2a)


Basic Information

Item Value
gene id XLOC_005310
gene name csdc2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19099264 ~ 19103490 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010195
TAGCGTCGTTGATTGTAATTGGAGCGTTTTGTTTTCTCGCGTCGCGTCGCGTCTCTCGCGTTCAGTTTTGGTGGGGTGTCCCTCCCTTTCCTCTCTTCCAGTAACCTCGTTTATTGTGTGCTACGTATGGGCCCCTTGAATCGAATATGTGGACCACGAATAATAGTATCCGGACATTTAATACTGGCGTTTGATGAAGCGATGTAAATCTATTTATCTCCGCAGCGCTCGTGATATCAACTGACAGATTGGTATCCAGTATAACGTTCCGCACGGCTTCATCCCATCTCCATTGAACTTCACACCAATGGCTGATTCAGAAAGCACGTCAACGTCTGATGGAAAGCTGCACTGCCCACACACACCTCTCTCGCTTTCATTACCTTTCCTGAGGGAGGGCAGTGGTCTTCTGGAGAGGAAACCTCCTCAGACGGGGGAACCTCCGAGTCCACTGCCAACCAAACGCACACGCACATATTCAGCATCGGTGAGAGCCAAATCTGGACCTGTTTACAAGGGCATTTGCAAGAACTTTTCAAGGTCTCAAGGTCATGGATTCATTCGGCCCTCCCATGGAGGAGAAGACATATTTGTCCACATCTCAGATATTGAGGGTGAATATGTCCCCATGGAGGGGGATGAGGTGACCTACAAAGTGTGTCCTGTTCCTCCCAAAAACATAAAGTTTCAAGCAGTCGAAGTGGTCATCACCAACCTTTCTTCCGGAAGGAAACACGAGACCTGGTCTGGGCAAGTGATCAGCTCGTAGCTCACACATTTAAGCctaaaacactaaaaaaaaaagcagagagaGGGGGGAAAGGGATTGGTTTAACTTGAGGTGCTCATTCTGGTGTTGTGTGTAAGTAGGATAGGGATGGAATAGCAATTAGGGTTATGCAACTGTTGTTTTCTCTATCCTGGCAGATATACATCAGAAAGATGGTAAGAGATCtgtttgggaaaatgctttgtgaTTTAAGTCAGCCGAGATTTGATGCAGCATTGGCAGAACATAATATAACTGTGACACAAAAAGCAGCAGTGTTGCCCTTGTTTGGCATCTTGTCATTTGTATGTACTTaatcatgtatttattttcattttatgtacAGAGGCAGTTGAGttcattgtgtttgtgtgtatgttccAGTCATCTATGTAAACTTGATTTCCTAAACTAAATGAATGCACATCAATATGAACTTCCATTTCTTTAATTGTAATTGATAGCACTGATGGTGTTTGTTTTCTGTAAGAGAGCTACAAATCCAAAAATCACAGTGATTAATTTTGTCAAGAACAATGCTTCTTACGATAATtctaataaaactgaaataacagTCAA
>TCONS_00010196
GAACTTCACACCAATGGCTGATTCAGAAAGCACGTCAACGTCTGATGGAAAGCTGCACTGCCCACACACACCTCTCTCGCTTTCATTACCTTTCCTGAGGGAGGGCAGTGGTCTTCTGGAGAGGAAACCTCCTCAGACGGGGGAACCTCCGAGTCCACTGCCAACCAAACGCACACGCACATATTCAGCATCGGTGAGAGCCAAATCTGGACCTGTTTACAAGGGCATTTGCAAGAACTTTTCAAGGTCTCAAGGTCATGGATTCATTCGGCCCTCCCATGGAGGAGAAGACATATTTGTCCACATCTCAGATATTGAGGGTGAATATGTCCCCATGGAGGGGGATGAGGTGACCTACAAAGTGTGTCCTGTTCCTCCCAAAAACATAAAGTTTCAAGCAGTCGAAGTGGTCATCACCAACCTTTCTTCCGGAAGGAAACACGAGACCTGGTCTGGGCAAGTGATCAGCTCGTAGCTC

Function

symbol description
csdc2a Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mRNA stability. Predicted to be active in cytoplasm. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human CSDC2 (cold shock domain containing C2).

GO:

id name namespace
GO:0043488 regulation of mRNA stability biological_process
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003730 mRNA 3'-UTR binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-442 Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in regulation of mRNA stability. Predicted to be active in cytoplasm. Is expressed in nervous system; neural tube; and trigeminal placode. Orthologous to human CSDC2 (cold shock domain containing C2).

Ensembl:

ensembl_id ENSDARG00000041323

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010195 False 1348 mRNA 0.43 4 19099264 19103490
TCONS_00010196 True 478 mRNA 0.50 3 19099840 19102736

Neighbor

gene id symbol gene type direction distance location
XLOC_005309 si:ch73-139e5.4 coding downstream 8050 19065679 ~ 19091214 (-)
XLOC_005308 rangap1b coding downstream 71196 19007926 ~ 19028068 (-)
XLOC_005307 chadlb coding downstream 91430 18989486 ~ 19007834 (-)
XLOC_005306 ep300a coding downstream 137773 18927065 ~ 18961491 (-)
XLOC_005305 desi1b coding downstream 200789 18895657 ~ 18898475 (-)
XLOC_005311 aco2 coding upstream 3081 19106571 ~ 19119176 (-)
XLOC_005312 tefa coding upstream 41343 19144833 ~ 19153177 (-)
XLOC_005313 zc3h7bb coding upstream 55342 19158832 ~ 19185865 (-)
XLOC_005314 cdc42ep1a coding upstream 137120 19240610 ~ 19250854 (-)
XLOC_005315 si:ch211-141o9.10 coding upstream 169473 19272963 ~ 19282120 (-)
XLOC_005303 AL772266.1 non-coding downstream 360735 18738413 ~ 18738529 (-)
XLOC_005298 NA non-coding downstream 644857 18453207 ~ 18454407 (-)
XLOC_005295 NA non-coding downstream 871534 18224534 ~ 18227730 (-)
XLOC_005291 NA non-coding downstream 1371724 17721801 ~ 17727540 (-)
XLOC_005289 dre-mir-2192 non-coding downstream 1392363 17706792 ~ 17706901 (-)
XLOC_005318 NA non-coding upstream 953481 20056971 ~ 20120711 (-)
XLOC_005319 CR352324.1 non-coding upstream 1085679 20189169 ~ 20189286 (-)
XLOC_005321 NA non-coding upstream 1211505 20314995 ~ 20334709 (-)
XLOC_005327 SLC16A6 non-coding upstream 1472150 20575640 ~ 20584439 (-)
XLOC_005332 CR753823.1 non-coding upstream 2466293 21569783 ~ 21569899 (-)

Expression


Co-expression Network