trnan-guu_13


Basic Information

Item Value
gene id trnan-guu_13
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10530971 ~ 10531044 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnan-guu_13
GTCTCTGTGGCGCAATCGGTTAGCGCGTTCGGCTGTTAACCGAAAGGTTGGTGGTTCGAGCCCACCCAGGGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnan-guu_13 True 74 tRNA 0.61 1 10530971 10531044

Neighbor

gene id symbol gene type direction distance location
trnak-cuu_12 NA coding upstream 46454 10484444 ~ 10484517 (+)
LOC117597108 NA coding upstream 46824 10482489 ~ 10484147 (+)
trnak-cuu_11 NA coding upstream 47685 10483214 ~ 10483286 (+)
trnak-cuu_10 NA coding upstream 48917 10481982 ~ 10482054 (+)
trnak-cuu_9 NA coding upstream 50152 10480747 ~ 10480819 (+)
rgp1 rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996 coding downstream 31188 10562232 ~ 10569484 (+)
trnak-cuu_21 NA coding downstream 34609 10565653 ~ 10565724 (+)
pik3c3 pik3c3,LOC107691920,LOC107562280 coding downstream 43879 10574923 ~ 10595122 (+)
faah2b LOC108267965 coding downstream 104661 10635705 ~ 10644751 (+)
nat8l nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165 coding downstream 148213 10679257 ~ 10689652 (+)
LOC117596986 NA non-coding upstream 24494 10499275 ~ 10506477 (+)
G62131 NA non-coding upstream 33611 10497130 ~ 10497360 (+)
G61842 NA non-coding upstream 172007 10357814 ~ 10358964 (+)
G61785 LOC108267738,LOC108267740,LOC108267935,LOC108267929 non-coding upstream 233407 10165529 ~ 10297564 (+)
LOC117596987 NA non-coding upstream 240287 10289874 ~ 10290684 (+)
trnak-cuu_20 NA non-coding downstream 412 10531456 ~ 10531528 (+)
LOC117596985 NA non-coding downstream 284706 10815750 ~ 10816552 (+)
G62373 NA non-coding downstream 333611 10864655 ~ 10864861 (+)
G62416 NA non-coding downstream 375981 10907025 ~ 10910142 (+)
LOC113540371 NA non-coding downstream 489089 11020133 ~ 11022796 (+)
trnak-cuu_19 NA other upstream 35501 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 39102 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 40321 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 41535 10489365 ~ 10489436 (+)
trnak-cuu_15 NA other upstream 42759 10488140 ~ 10488212 (+)
c4h4orf48 c7h4orf48 other downstream 126313 10657357 ~ 10663411 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 1059671 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 1113857 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1761447 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2675613 13206657 ~ 13219859 (+)

Expression


Co-expression Network