trnar-ucu_1


Basic Information

Item Value
gene id trnar-ucu_1
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6430486 ~ 6430577 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ucu_1
GGCTCTGTGGCGCAATGGATAGCGCATTGGACTTCTAATtcaaaggttgtgggttcgagtcccaCCAGAGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ucu_1 True 73 tRNA 0.56 2 6430486 6430577

Neighbor

gene id symbol gene type direction distance location
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding upstream 225596 6202522 ~ 6204890 (+)
foxf2a LOC108267118 coding upstream 253327 6171029 ~ 6177159 (+)
foxq1a LOC108268192 coding upstream 266646 6162153 ~ 6163840 (+)
trnat-ugu_1 NA coding upstream 291114 6139300 ~ 6139372 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding upstream 393254 6014920 ~ 6037232 (+)
wrnip1 wrnip1 coding downstream 120408 6550985 ~ 6572077 (+)
LOC113547283 NA coding downstream 141491 6572068 ~ 6576902 (+)
dhx30 dhx30 coding downstream 149778 6580355 ~ 6602411 (+)
LOC113547232 LOC108262378 coding downstream 213951 6644528 ~ 6683316 (+)
LOC113547277 NA coding downstream 277804 6708381 ~ 6713301 (+)
G60384 NA non-coding upstream 4142 6426119 ~ 6426344 (+)
G60362 NA non-coding upstream 16473 6413800 ~ 6414013 (+)
G60312 NA non-coding upstream 50024 6380245 ~ 6380462 (+)
LOC117596997 NA non-coding upstream 124924 6301325 ~ 6305562 (+)
G60267 NA non-coding upstream 134252 6295991 ~ 6296234 (+)
LOC113547253 NA non-coding downstream 192259 6622836 ~ 6623651 (+)
LOC113547233 NA non-coding downstream 218205 6648782 ~ 6651846 (+)
G60529 NA non-coding downstream 358643 6789220 ~ 6797109 (+)
LOC113527002 NA non-coding downstream 371879 6802456 ~ 6805176 (+)
G60536 NA non-coding downstream 379589 6810166 ~ 6812401 (+)
trnat-ugu_2 NA other upstream 286684 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 834261 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 1038657 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 1240773 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 1415673 4974195 ~ 5014813 (+)
LOC117597080 NA other downstream 164549 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 253759 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1625479 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2264775 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2293968 8724545 ~ 9370485 (+)

Expression


Co-expression Network