trnar-ucu_2


Basic Information

Item Value
gene id trnar-ucu_2
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 20101025 ~ 20101098 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnar-ucu_2
GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAGTCCCGGCAGAGATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnar-ucu_2 True 74 tRNA 0.56 1 20101025 20101098

Neighbor

gene id symbol gene type direction distance location
LOC113539830 NA coding upstream 1948 20091887 ~ 20099077 (+)
LOC113540456 LOC108268101 coding upstream 13720 20081770 ~ 20087305 (+)
LOC113540455 NA coding upstream 25990 20069061 ~ 20075035 (+)
ntn4 ntn4 coding upstream 117748 19971311 ~ 19983277 (+)
si:ch73-71d17.2 LOC108267752 coding upstream 147802 19943740 ~ 19953223 (+)
kirrel1a kirrel,kirrela,LOC108440115,LOC107731894,LOC107558429,LOC107679226 coding downstream 1383 20102481 ~ 20129464 (+)
hacd4 hacd4 coding downstream 58214 20159312 ~ 20166249 (+)
mllt3 mllt3,LOC107683508 coding downstream 120790 20221888 ~ 20271231 (+)
c4h4orf54 LOC108268294 coding downstream 188699 20289797 ~ 20297146 (+)
trmt10a trmt10a,LOC107683564,LOC106608639 coding downstream 206032 20307130 ~ 20314066 (+)
G67642 snrpf,LOC107738052,LOC107558408,LOC106609479 non-coding upstream 135137 19962599 ~ 19965888 (+)
G67595 NA non-coding upstream 183856 19916600 ~ 19917169 (+)
G67594 NA non-coding upstream 186622 19911739 ~ 19914403 (+)
G67582 NA non-coding upstream 212300 19888178 ~ 19888725 (+)
G67579 NA non-coding upstream 219286 19879978 ~ 19881739 (+)
G67827 NA non-coding downstream 148960 20250058 ~ 20275675 (+)
G67958 LOC108267586 non-coding downstream 379502 20480600 ~ 20481755 (+)
G68054 NA non-coding downstream 534250 20635348 ~ 20635565 (+)
G68070 NA non-coding downstream 591165 20692263 ~ 20693111 (+)
G68192 NA non-coding downstream 763780 20864878 ~ 20895955 (+)
dock11 dock11,LOC107683516 other upstream 33805 19990684 ~ 20067220 (+)
G66864 NA other upstream 1242373 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1892461 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1957394 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 2090063 18000158 ~ 18010962 (+)
fcer1g LOC100305060 other downstream 46697 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 919160 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1213120 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 1527978 21629076 ~ 21640157 (+)
LOC113540377 NA other downstream 1651318 21752416 ~ 21762301 (+)

Expression


Co-expression Network