trnas-uga_1


Basic Information

Item Value
gene id trnas-uga_1
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28236186 ~ 28236267 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnas-uga_1
GTAGTTGTGGCCGAGTGGTTAAGGCAATGAACTTGAAATCCATTGGGGTCTCTCCGTGCAGGTTCAAATCCTGCCAACTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnas-uga_1 True 82 tRNA 0.59 1 28236186 28236267

Neighbor

gene id symbol gene type direction distance location
LOC113540124 NA coding downstream 40129 28173321 ~ 28196057 (-)
LOC113540126 NA coding downstream 65205 28157829 ~ 28170981 (-)
LOC113540134 LOC108267236 coding downstream 95279 28124082 ~ 28140907 (-)
ahsg2 LOC108267477 coding downstream 114083 28117092 ~ 28122103 (-)
tsc22d2 tsc22d2,LOC107709364,LOC103395840,LOC107559349 coding downstream 142249 28075616 ~ 28093937 (-)
cdc73 cdc73 coding upstream 2629 28238896 ~ 28275315 (-)
ro60 trove2 coding upstream 40429 28276696 ~ 28286658 (-)
shha shh coding upstream 240164 28476431 ~ 28491847 (-)
lmbr1 lmbr1 coding upstream 338641 28574908 ~ 28605243 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding upstream 374924 28611191 ~ 28619112 (-)
G72658 pfn2,pfn2l non-coding downstream 91320 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 95748 28138866 ~ 28140438 (-)
G72651 LOC108267776 non-coding downstream 166909 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 168102 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 223382 28011684 ~ 28012804 (-)
G72709 NA non-coding upstream 106867 28343134 ~ 28383460 (-)
G72720 NA non-coding upstream 129390 28365657 ~ 28379132 (-)
G72726 NA non-coding upstream 161394 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 431056 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 476767 28713034 ~ 28717955 (-)
LOC117597043 NA other downstream 10583 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 194401 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 680199 27547752 ~ 27555987 (-)
tsen15 tsen15 other downstream 752353 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 803508 27415267 ~ 27432678 (-)
trnas-uga_2 NA other upstream 457 28236724 ~ 28236805 (-)
LOC113540437 fam159a other upstream 412057 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 551347 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 637311 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 912371 29148638 ~ 29171921 (-)

Expression


Co-expression Network