trnat-ugu_8


Basic Information

Item Value
gene id trnat-ugu_8
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27621311 ~ 27621383 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnat-ugu_8
GGCTCCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCAATCCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-ugu_8 True 73 tRNA 0.58 1 27621311 27621383

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_6 NA coding upstream 634 27620605 ~ 27620677 (+)
dvl3a dvl3a,LOC108268006,LOC108430757,LOC107681796,LOC107671749,LOC107559372 coding upstream 39289 27562149 ~ 27582022 (+)
ap2m1a ap2m1,LOC108267679,LOC108430755 coding upstream 75182 27534676 ~ 27546129 (+)
si:ch211-252f13.5 LOC108267682 coding upstream 104107 27509850 ~ 27517204 (+)
abi1b abi1b,LOC108267643,LOC107671751,LOC107559371,LOC108430754,LOC107681778 coding upstream 113112 27495848 ~ 27508199 (+)
prtfdc1b prdc1,LOC108430708,LOC105891346,LOC105019119 coding downstream 7065 27628448 ~ 27639961 (+)
arhgap21b LOC108267702 coding downstream 27431 27648814 ~ 27698656 (+)
kmt2cb LOC108267465 coding downstream 235953 27857336 ~ 27939424 (+)
vps4b vps4b,LOC107681797,LOC107727524,LOC107710065,LOC105899228,LOC107671729 coding downstream 320081 27941464 ~ 27956911 (+)
kdsr kdsr,LOC106599247,LOC102792240 coding downstream 336502 27957885 ~ 27966288 (+)
LOC113540592 NA non-coding upstream 61884 27556085 ~ 27559427 (+)
LOC113540696 NA non-coding upstream 63409 27557765 ~ 27557902 (+)
LOC113540695 NA non-coding upstream 64663 27556517 ~ 27556648 (+)
G72118 NA non-coding upstream 65605 27553127 ~ 27555706 (+)
LOC113540179 NA non-coding upstream 133600 27483820 ~ 27487711 (+)
G72236 NA non-coding downstream 390361 28011744 ~ 28012459 (+)
G72276 LOC108267477 non-coding downstream 493068 28114451 ~ 28122142 (+)
G72336 NA non-coding downstream 847565 28468948 ~ 28471765 (+)
G72378 NA non-coding downstream 953539 28574922 ~ 28578950 (+)
G72404 NA non-coding downstream 998441 28619824 ~ 28637201 (+)
sgip1b LOC108267185,LOC108430747,LOC107593781,LOC107719259,LOC107681818,LOC107709351 other upstream 214913 27384807 ~ 27406398 (+)
gng7 NA other upstream 739841 26872676 ~ 26881470 (+)
LOC117597079 LOC108267150,LOC107738160 other upstream 1245485 26353189 ~ 26375826 (+)
zgc:66427 zgc:66427,LOC108267510,LOC107738154,LOC101067737,LOC107100876,LOC103396713,LOC104950485,LOC107659393,LOC107668973,LOC107706368,LOC107557724,LOC107591360 other upstream 1328527 26288290 ~ 26292784 (+)
G71385 NA other upstream 1392120 26228764 ~ 26229191 (+)
insig1 insig1 other downstream 681468 28302851 ~ 28383422 (+)
htr5ab htr5a,htr5ab,LOC108412811,LOC103024346,LOC107684958,LOC107659435,LOC107591053,LOC107742155,LOC107598724 other downstream 695021 28316404 ~ 28338173 (+)
gng5 NA other downstream 1137162 28758545 ~ 28761451 (+)
selenot1a selenot,selt1a,LOC107681817,LOC107708642 other downstream 1171464 28792847 ~ 28797159 (+)
G72873 NA other downstream 1252973 28874356 ~ 28912104 (+)

Expression


Co-expression Network