G38240 (LOC108263783)


Basic Information

Item Value
gene id G38240
gene name LOC108263783
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 56882 ~ 57758 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45265
aacgtgtgtgttaATCTCACCTCCACCTCTTTAGTGTCTCCATGTTCAAAGTACTCCTGTATGATGGGGTTCATGACCTTCTCCAGCTCTCCTTCTTCCAGCTCAGGAACCACTGTGGCATATACTGTgtccccTGTGCAGACTCATCATAGTTTGGATCTTTACAGTCTGGTTCTTCCATCTCGTACACCAAACCAGCAGCTCCCCACACACCCTTTCCCCCAGCGCCACCtacacactcgcacacatgcTTGGGCAGTCCTCGTCCTTTTCCCATGCGAGACTTCCTGTCGTGTGTTTGCGTTTTTCCTTTAGGGCTGTGAGGGTCAGGCACATCCCCGGTCACACATTCAGACAGAGAATCGCGGGTGGAGTCACGTGATGATGACGACTTCCTGAGACGACGTTTAGCCTTTGCTTTGAGCCGGGCCTCATGAAGAGCCTTTTCCTGTGGAGTCCAGTTCCCATTCACCTCACTGTCAATCAGCTCCTCATCATACACTGACTCCGCCTCCTCATCTGCCCCCACTGAGAACACA
>TU45266
aacgtgtgtgttaATCTCACCTCCACCTCTTTAGTGTCTCCATGTTCAAAGTACTCCTGTATGATGGGGTTCATGACCTTCTCCAGCTCTCCTTCTTCCAGCTCAGGAACCACTGTGGCATATACTGTgtccccTGTGCAGACTCATCATAGTTTGGATCTTTACAGTCTGGTTCTTCCATCTCGTACACCAAACCAGCAGCTCCCCACACACCCTTTCCCCCAGCGCCACCtacacactcgcacacCTTTCTTGGGCAGTCCTCGTCCTTTTCCCATGCGAGACTTCCTGTCGTGTGTTTGCGTTTTTCCTTTAGGGCTGTGAGGGTCAGGCACATCCCCGGTCACACATTCAGACAGAGAATCGCGGGTGGAGTCACGTGATGATGACGACTTCCTGAGACGACGTTTAGCCTTTGCTTTGAGCCGGGCCTCATGAAGAGCCTTTTCCTGTGGAGTCCAGTTCCCATTCACCTCACTGTCAATCAGCTCCTCATCATACACTGACTCCGCCTCCTCATCTGCCCCCACTGAGAACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45265 False 539 lncRNA 0.52 3 56882 57758
TU45266 True 540 lncRNA 0.52 3 56882 57758

Neighbor

gene id symbol gene type direction distance location
cdkn2a/b LOC108263810 coding upstream 688580 746338 ~ 755807 (-)
cxxc4 cxxc4 coding upstream 780753 838511 ~ 871353 (-)
ppa2 ppa2,LOC108414713 coding upstream 868193 925951 ~ 937449 (-)
ints12 ints12 coding upstream 1007629 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 1088371 1146129 ~ 1153350 (-)
G38273 NA non-coding upstream 51015 108773 ~ 109005 (-)
G38275 NA non-coding upstream 52095 109853 ~ 110099 (-)
G38277 NA non-coding upstream 54060 111818 ~ 112051 (-)
G38385 NA non-coding upstream 158496 216254 ~ 272915 (-)
LOC117596827 LOC108261757,LOC108263779,LOC108261164 non-coding upstream 177211 234969 ~ 236237 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other upstream 163971 221729 ~ 267815 (-)
G38400 NA other upstream 257223 314981 ~ 315528 (-)
LOC113524614 NA other upstream 946719 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 1212687 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 1814175 1871933 ~ 1877583 (-)

Expression


Co-expression Network