G38275


Basic Information

Item Value
gene id G38275
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 109853 ~ 110099 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45307
ttatttgtgataaatgcatgttagttagctctctgacggagaagattgcagcattagaggtgcgcatccagactctagagagggttagtgagagtgagagcagcgtagtttctgtaggggaaagtctggatgccttaggcggagttagtaatcccccaactccggcattagagccctcacagcggggcgaatgggtgacgactcggcggcataatcgcaaagccaaagctaacgctaaggctcgccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45307 True 247 lncRNA 0.52 1 109853 110099

Neighbor

gene id symbol gene type direction distance location
cdkn2a/b LOC108263810 coding upstream 636239 746338 ~ 755807 (-)
cxxc4 cxxc4 coding upstream 728412 838511 ~ 871353 (-)
ppa2 ppa2,LOC108414713 coding upstream 815852 925951 ~ 937449 (-)
ints12 ints12 coding upstream 955288 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 1036030 1146129 ~ 1153350 (-)
G38273 NA non-coding downstream 848 108773 ~ 109005 (-)
G38240 LOC108263783 non-coding downstream 52095 56882 ~ 57758 (-)
G38277 NA non-coding upstream 1719 111818 ~ 112051 (-)
G38385 NA non-coding upstream 106155 216254 ~ 272915 (-)
LOC117596827 LOC108261757,LOC108263779,LOC108261164 non-coding upstream 124870 234969 ~ 236237 (-)
G38393 NA non-coding upstream 159187 269286 ~ 273434 (-)
G38401 NA non-coding upstream 209728 319827 ~ 320131 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other upstream 111630 221729 ~ 267815 (-)
G38400 NA other upstream 204882 314981 ~ 315528 (-)
LOC113524614 NA other upstream 894378 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 1160346 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 1761834 1871933 ~ 1877583 (-)

Expression


Co-expression Network