LOC113524725 (LOC108261757,LOC108261316,LOC108263784,LOC108261164)


Basic Information

Item Value
gene id LOC113524725
gene name LOC108261757,LOC108261316,LOC108263784,LOC108261164
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 200601 ~ 213729 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45347
GTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAA
>TU45362
ATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAG
>XM_034302586.1
TTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGACGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACAAACCTCAATGACTCTGTAAAAGTGCTGAACTTCACCTATGagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCACAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAAACACCAAAACGCCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATTGGGGAATGTCCTGATATACATTCGTCTAGTTTTTAAGAACTTGTCCAGAGTCCCTACTGAGGCTGAGGTTCTCAAAGCTGCTAATGCTCTGCTGGATGCAAAGATCAGAAGAGCACGAGATCTTACAACACAAAAACTGAACGAACCTGTGAGCATACAGAATGTCACCTATCAGAAAACTGACAGCAACTCATACATTATCAACTTTGGATTCCAAATCAGTGATGTGAACATCTCCAAGGACATCCAGCTGAGGAGCGAAACATATGATTTAATCCAAAGCACCATCAACAGCCTGctgaacaCTATTCTGAGTGATAAAAATGCTACTCCTTTTGTCTTCCCACGAGCAAACTACACgTTTAATGGTACAGTCGTTGTGGCTGATTCAGAATACGTCTTTGTGGAAGGTGAAACCAAGTGGACACCAAGTGGATTTCTTTCTGCAATACTCAACATTAGCGGTCTGTCGAACTTCACCACTCCTGCTGCTCAAACAACCCCCCCTGTCCATGTAGTCCTGAGGCCCACAGTCCAAATAAACAACACCACCTCTGGGGGAAATGCTGCATGGATCCTGGCCATCATTATCCCCTGCAGTATAGTCATTATTCTCATACCGTGCTGGATTCTGCTCTGCTGTCTGCTGTGTGGCTGCTGTGCTGGTTTAAGGAGGCGCTACAACAGAAGACGGTCCTACAATGTTCAATACACAACACGAAATGGActcttttaaaaactgtttgaatgtaaaataatttcaccaaaatattatgtgtaattattacaatctattttatttatagtttattttgtatttgtttatctatttaattatttcacccatttcattctattttatt
>XM_034302587.1
TTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGACGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACAAACCTCAATGACTCTGTAAAAGTGCTGAACTTCACCTATGagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAAACACCAAAACGCCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATTGGGGAATGTCCTGATATACATTCGTCTAGTTTTTAAGAACTTGTCCAGAGTCCCTACTGAGGCTGAGGTTCTCAAAGCTGCTAATGCTCTGCTGGATGCAAAGATCAGAAGAGCACGAGATCTTACAACACAAAAACTGAACGAACCTGTGAGCATACAGAATGTCACCTATCAGAAAACTGACAGCAACTCATACATTATCAACTTTGGATTCCAAATCAGTGATGTGAACATCTCCAAGGACATCCAGCTGAGGAGCGAAACATATGATTTAATCCAAAGCACCATCAACAGCCTGctgaacaCTATTCTGAGTGATAAAAATGCTACTCCTTTTGTCTTCCCACGAGCAAACTACACgTTTAATGGTACAGTCGTTGTGGCTGATTCAGAATACGTCTTTGTGGAAGGTGAAACCAAGTGGACACCAAGTGGATTTCTTTCTGCAATACTCAACATTAGCGGTCTGTCGAACTTCACCACTCCTGCTGCTCAAACAACCCCCCCTGTCCATGTAGTCCTGAGGCCCACAGTCCAAATAAACAACACCACCTCTGGGGGAAATGCTGCATGGATCCTGGCCATCATTATCCCCTGCAGTATAGTCATTATTCTCATACCGTGCTGGATTCTGCTCTGCTGTCTGCTGTGTGGCTGCTGTGCTGGTTTAAGGAGGCGCTACAACAGAAGACGGTCCTACAATGTTCAATACACAACACGAAATGGActcttttaaaaactgtttgaatgtaaaataatttcaccaaaatattatgtgtaattattacaatctattttatttatagtttattttgtatttgtttatctatttaattatttcacccatttcattctattttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45347 False 355 TUCP 0.46 3 201779 205670
TU45362 False 261 TUCP 0.46 2 207459 208898
XM_034302586.1 True 4883 mRNA 0.45 41 200601 213729
XM_034302587.1 False 3989 mRNA 0.45 33 200601 213729

Neighbor

gene id symbol gene type direction distance location
LOC117596911 LOC108262539 coding upstream 35087 153816 ~ 165514 (+)
LOC117596910 NA coding upstream 47126 142352 ~ 153475 (+)
LOC117596909 NA coding upstream 63371 130641 ~ 137230 (+)
pdcd4a LOC108263783,LOC108410814,LOC107595047 coding upstream 136055 46540 ~ 64546 (+)
LOC117596913 NA coding downstream 137681 351410 ~ 356704 (+)
LOC117596826 LOC108261164,LOC108261316,LOC108261757 coding downstream 142359 356088 ~ 360872 (+)
LOC113525489 NA coding downstream 147227 360956 ~ 370724 (+)
LOC117596915 NA coding downstream 204785 418514 ~ 426890 (+)
LOC113525486 NA coding downstream 236865 450594 ~ 464059 (+)
LOC117596908 NA non-coding upstream 58365 140249 ~ 142236 (+)
LOC117596477 NA non-coding upstream 62753 137328 ~ 137848 (+)
G38293 NA non-coding upstream 75964 124380 ~ 124637 (+)
G38279 NA non-coding upstream 87477 112765 ~ 113124 (+)
G38278 NA non-coding upstream 87932 112426 ~ 112669 (+)
G38317 NA non-coding downstream 55591 269320 ~ 275049 (+)
G38322 NA non-coding downstream 101600 315329 ~ 315671 (+)
G38323 NA non-coding downstream 106087 319816 ~ 320020 (+)
G38324 NA non-coding downstream 125087 338816 ~ 339897 (+)
LOC117596828 NA non-coding downstream 409626 623355 ~ 624398 (+)
mtap mtap,LOC108263789 other downstream 508398 722127 ~ 744999 (+)
G38577 NA other downstream 850243 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 889049 1102778 ~ 1141934 (+)
trmo trmo other downstream 952116 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 980490 1194219 ~ 1224601 (+)

Expression


Co-expression Network