Gene
RNA
| Item | Value |
|---|---|
| gene id | G38361 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 688670 ~ 699198 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU45414 | True | 334 | lncRNA | 0.41 | 3 | 688670 | 699198 |
| TU45418 | False | 334 | lncRNA | 0.41 | 3 | 688670 | 699198 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113525482 | NA | coding | upstream | 56140 | 625093 ~ 632530 (+) |
| LOC113525486 | NA | coding | upstream | 224611 | 450594 ~ 464059 (+) |
| LOC117596915 | NA | coding | upstream | 261780 | 418514 ~ 426890 (+) |
| LOC113525489 | NA | coding | upstream | 317946 | 360956 ~ 370724 (+) |
| LOC117596826 | LOC108261164,LOC108261316,LOC108261757 | coding | upstream | 327798 | 356088 ~ 360872 (+) |
| LOC117596917 | NA | coding | downstream | 286350 | 985548 ~ 988804 (+) |
| LOC113524625 | LOC108263780 | coding | downstream | 318196 | 1017394 ~ 1025345 (+) |
| arhgef38 | arhgef38 | coding | downstream | 339477 | 1038675 ~ 1061874 (+) |
| uso1 | uso1 | coding | downstream | 373539 | 1072737 ~ 1094921 (+) |
| hemgn | NA | coding | downstream | 463421 | 1162619 ~ 1165369 (+) |
| LOC117596828 | NA | non-coding | upstream | 64272 | 623355 ~ 624398 (+) |
| G38324 | NA | non-coding | upstream | 348773 | 338816 ~ 339897 (+) |
| G38323 | NA | non-coding | upstream | 368650 | 319816 ~ 320020 (+) |
| G38322 | NA | non-coding | upstream | 372999 | 315329 ~ 315671 (+) |
| G38317 | NA | non-coding | upstream | 413621 | 269320 ~ 275049 (+) |
| G38481 | NA | non-coding | downstream | 11137 | 710335 ~ 710574 (+) |
| G38484 | NA | non-coding | downstream | 27440 | 726638 ~ 727365 (+) |
| G38489 | NA | non-coding | downstream | 41319 | 740517 ~ 741198 (+) |
| G38503 | NA | non-coding | downstream | 76838 | 776036 ~ 776249 (+) |
| G38514 | NA | non-coding | downstream | 123076 | 822274 ~ 822824 (+) |
| LOC113524725 | LOC108261757,LOC108261316,LOC108263784,LOC108261164 | other | upstream | 474941 | 200601 ~ 213729 (+) |
| mtap | mtap,LOC108263789 | other | downstream | 22929 | 722127 ~ 744999 (+) |
| G38577 | NA | other | downstream | 364774 | 1063972 ~ 1065331 (+) |
| coro2a | coro2a | other | downstream | 403580 | 1102778 ~ 1141934 (+) |
| trmo | trmo | other | downstream | 466647 | 1165845 ~ 1188594 (+) |
| sh3gl2a | sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 | other | downstream | 495021 | 1194219 ~ 1224601 (+) |
