LOC117596825 (LOC108263784,LOC108261164,LOC108261316,LOC108263779)


Basic Information

Item Value
gene id LOC117596825
gene name LOC108263784,LOC108261164,LOC108261316,LOC108263779
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 221729 ~ 267815 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45455
acagctgcatctacaactactccagctccaaccattacaactgtggaaccaacaactacagagcaaagaaccacagctacaactgtaccaactACACCATTTACAACAGAACTGACCAGTACTGCTGTTTCAGCTACACAGGTTACGACAAGCACAGGACCAACAACAGTAGAAACATCTGCATCTAcaactactccagctccaagcattacaactgtggaaccaacaactacagaggaaagcaccacagctacaactgtaccaactACACCACCAACAACAGAACTGACCAGTACTGCTGTTTCAACTACACAGGTTACGACAAGCACAGGACCAACAACAGTAGAAACAGATGCATCTACAAGTATTCCACCTCTAACCAATGCAATTGCTAACCCAACAACTGCAGTGGAAaaaaccacagctacaactgtaccaacATCAACAACAGAAATGAACAATATTACTCGATTCATAACACAGGCTACAGTAACTACAaaaccaacaacagcagaaacaaataGACTTACAACTACTCCATTTCCAAGCAGTACAAATGAAGCATCAACAGCAATCACAGAACCAACAACAGAAGAAACATCTACTAGTACAACTAGTACAAACTTGAGTGCTACATTTGAAGCACCAAGATCTACAGAGGAAAGTCCAATGACATCACCTGAAACTGCACaaccaacaattacaacttcTGAAATGACAACTACTACTGAGTTCACAACACAGTCTCCAACTTCTCCAGCAACAAAAGCATTAATACCTGTTTCAGCTGTGGTTCACACAAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTAACAAACCTCAATGACTCTGTAAAAGTGCTGAACTTCACCTATGagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGGAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACTCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGATTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTAT
>TU45461
ATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgct
>TU45464
ATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaacGACAC
>XM_034302585.1
aacaaaagcactagaaacagctgcatctacaactactccagctccaaccattacaactgtggaaccaacaactacagagcaaagaaccacagctacaactgtaccaactACACCATTTACAACAGAACTGACCAGTACTGCTGTTTCAGCTACACAGGTTACGACAAGCACAGGACCAACAACAGTAGAAACATCTGCATCTAcaactactccagctccaagcattacaactgtggaaccaacaactacagaggaaagcaccacagctacaactgtaccaactACACCACCAACAACAGAACTGACCAGTACTGCTGTTTCAACTACACAGGTTACGACAAGCACAGGACCAACAACAGTAGAAACAGATGCATCTACAAGTATTCCACCTCTAACCAATGCAATTGCTAACCCAACAACTGCAGTGGAAaaaaccacagctacaactgtaccaacATCAACAACAGAAATGAACAATATTACTCGATTCATAACACAGGCTACAGTAACTACAaaaccaacaacagcagaaacaaataGACTTACAACTACTCCATTTCCAAGCAGTACAAATGAAGCATCAACAGCAATCACAGAACCAACAACAGAAGAAACATCTACTAGTACAACTAGTACAAACTTGAGTGCTACATTTGAAGCACCAAGATCTACAGAGGAAAGTCCAATGACATCACCTGAAACTGCACaaccaacaattacaacttcTGAAATGACAACTACTACTGAGTTCACAACACAGTCTCCAACTTCTCCAGCAACAAAAGCATTAATACCTGTTTCAGCTGTGGTTCACACAAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTAACAAACCTCAATGACTCTGTAAAAGTGCTGAACTTCACCTATGagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGGAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACTCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGATTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACCAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaacGACACCTACAACCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACAAACCTCAATGACTCTGTAAAAGTGCTGAACTTCACCTATGagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAACACTctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGACTTCAGGAAACCAGGTTAAAGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTCACAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTACAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCATTCAACGTCAGTAACATCAGCatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCTTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGGAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACAAACCTCAATGACTCTGTAAAAGTGCTGAACTTCACCTACGagaAAATTTCAGACACCTCCTATGCACTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTGCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctatgagaAAATTTCAGACACCTCCTATGCAGTCAACTTTGCAttcaacatcagtaacatcagcatGCCAGAGAACCCTGAACTCAGGAATGACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAATGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCAGTCAACTTTGCAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAACCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTGTATCTGGTTCAGCTGTGGTTCAGACCAGGATGGTCTTCAattcctcctctcctgttcccACTGAGAGTTTGGTCCTCAGTGCAACCCAGACTCTTCTGAATGCTCGACTCACaaacctcactgactctgtaaaagtgctgaacttcacctacgagaAAATTTCAGACACCTCCTATGCACTCAACTTTGTAttcaacatcagtaacatcagcatgccagagaaccctgagctcaggaatgACACCTACAAGCAAGTGAAGAGCATCATCAACAacgctctaaacacacttctAAATGAACCTGGTGCAGAACCATTCCAACCCCAGAGCTCCTTCTTCACGAGTTCAGGAAACCAGGTTAAAGGTGACATGAAGTACCACTTCCAAGATGGAGACACTAAAACACCAGCAGCCTTCCTGAATGAGCTTAAAGCCCAGAGCACACCTATATTGGGGAACGTCCTGATACACATTCGTCTAGTTTTTAAGAACTTGACCAGAGTACCCACTGAGGCTGAGGTTCTCAAAGCTGCTAATGCTCTGCTGGAACCAAATGCCAGAACAGTGCGAGATCTTACAACACAAAAACTGAACGAACCTGTGAGCATACAGAACGTCACCTATCAGAAAATTGACAGCAACTCATACTTTATCAGCTTTGCATTCCAAATCCGTGATGTGAACATCTCCAAGGACATCCAGCTGATGAACATAACATATGATATAATCCAAAACAGCATCAACAGCCTGCTGAACACTATTCTGAATGCAAAAGGTGCTCATTCGTTTGACTTCCCACGAGCAAACTACCTgATTAATGGTACAGTCATTGTGGCTGATTCAGAATTCATCTTTGTGGAAGGTGAAACCAAGTGGACACCAAGTGGATTTCTTGCTGCAATACTCAACATTAGCGGTCTGTTGAACTTCACCACTCCTGCTGCTCAAACAACCCCCCCTGTCCATGTAGTCCTGAGGCCCACAGTCCAAGCACACAACAGCACCTCTGGGGGAAATGCTGCATGGATCCTGGCCATCATTATCCCCTGCAGTATAGTCATTATTCTCATACCGTGCTGGATTCTGCTCTGCTGTCTGCTGTGTGGCTGCTGTGCTGGTTTAAGGAGGCGCTACAACAGAAGACGGTCCTACAATGTCCAACGCACAACATGAAACAGACGCTTTTAAAAATAGACGTGTAAAATAAGCTCATAAAAATATGACTTGTAACTCCAAACCCAAATGTacctaatatttaaattatttattaaggatATTTATAATAAGCCTTATCAAATGATGTCTCTAAATAGTTCttattttattctgatttgtTATTCAATAATACATCAAGTTGTGGCAaaataatttgtcatttaaattaaacttaGTAATACTGAAGATATTTTTCatgatccattttaaattatgttaattTCAAATTGGGATTAATTATAATAGTATTGGCCCTTATCCAGAGTTGCATAGAAACAAGCATGGATTCAATCGCCTGGAATGACCTATGAATAAACCTGCTTCTGATTCATGAAACTGTCATACAACATCAAAACAAGTGTTGATTTGAGAGCATATGTTAAAACAAccataagaagaagaagctccATCCACTATTTACATGTTTGTacactatttattatttcatatgcATAAGGCACACCCTAATTTAAATCAACTTCAGAGAAGCTAGAAGAGTTAGAGGTGCTTGTGCCTGAGGTTGGTGAATGTAGAAATATTCTTTTCAGAAGCCtcaaaaaataatgtgaataaaaataaagtggtaGCATCCCCCACCACTTAGTAGGACATTTTCTAATAAGACAGCAGTGACTGAGAGCCTCAATTCTGCCTTCAGAACTCAGGGAACCATTTGGCACATACACTCAACTACATACTTATTAGCATCCTTCAAAGGACCTGCTAAAATGACAGGAAACATTACAAACAATTATTTGGATGTTACTATGGTGGTTGAGGATCCTTGTGCTGGAAGACTTTATCAACAAAATCCAGTCAGTCAGggcaaaagcacacacacacacacacacacacaaaatggtaGAGCAGCAAGGGTTATACACAGGTTCCCAgctctggtcctggagaacccatTGTCCTGGACcttttagtgttttcctgctctaatACTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45455 False 1223 TUCP 0.43 6 263486 267799
TU45461 False 277 TUCP 0.58 2 260769 261151
TU45464 False 243 lncRNA 0.47 2 238789 260075
XM_034302585.1 True 8769 mRNA 0.45 62 221729 267815

Neighbor

gene id symbol gene type direction distance location
cdkn2a/b LOC108263810 coding upstream 478523 746338 ~ 755807 (-)
cxxc4 cxxc4 coding upstream 570696 838511 ~ 871353 (-)
ppa2 ppa2,LOC108414713 coding upstream 658136 925951 ~ 937449 (-)
ints12 ints12 coding upstream 797572 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 878314 1146129 ~ 1153350 (-)
G38277 NA non-coding downstream 109678 111818 ~ 112051 (-)
G38275 NA non-coding downstream 111630 109853 ~ 110099 (-)
G38273 NA non-coding downstream 112724 108773 ~ 109005 (-)
G38240 LOC108263783 non-coding downstream 163971 56882 ~ 57758 (-)
G38393 NA non-coding upstream 1471 269286 ~ 273434 (-)
G38401 NA non-coding upstream 52012 319827 ~ 320131 (-)
G38402 NA non-coding upstream 58867 326682 ~ 326986 (-)
G38404 NA non-coding upstream 75016 342831 ~ 343055 (-)
G38405 NA non-coding upstream 75546 343361 ~ 343651 (-)
G38400 NA other upstream 47166 314981 ~ 315528 (-)
LOC113524614 NA other upstream 736662 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 1002630 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 1604118 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 1701948 1969763 ~ 1979549 (-)

Expression


Co-expression Network