G38393


Basic Information

Item Value
gene id G38393
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 269286 ~ 273434 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45466
caaacacagaaacaacaacagtagaaacagctgcatctacaactactccagctccaagcactacaactgtggaaccaacaactacagaggaaacaaccacagctacaactgtaccaactacaacaccaacaacagacctgaccagtaccgctgtatccacaacacaggctacaacacaggctacaacaaacacagaaacaacaacagtagaaacagctgcatctacaacGACTCCAGCTCCAAGCACTACAACtgtggaaccaacaactacagaggaaacaaccacagctacaactgtaccaactacaacaccaacaacagacctgaccagtaccgctgtatccacaacacaggctacaacaaacacagaaacaacaacagtagaaacagctgcatctacaactactccagctccaagcactacaactgtggaaccaacaactacagaggaaacaaa

Function

GO:

id name namespace
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU45466 True 457 lncRNA 0.45 2 269286 273434

Neighbor

gene id symbol gene type direction distance location
cdkn2a/b LOC108263810 coding upstream 472904 746338 ~ 755807 (-)
cxxc4 cxxc4 coding upstream 565077 838511 ~ 871353 (-)
ppa2 ppa2,LOC108414713 coding upstream 652517 925951 ~ 937449 (-)
ints12 ints12 coding upstream 791953 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 872695 1146129 ~ 1153350 (-)
LOC117596827 LOC108261757,LOC108263779,LOC108261164 non-coding downstream 33049 234969 ~ 236237 (-)
G38277 NA non-coding downstream 157235 111818 ~ 112051 (-)
G38275 NA non-coding downstream 159187 109853 ~ 110099 (-)
G38273 NA non-coding downstream 160281 108773 ~ 109005 (-)
G38240 LOC108263783 non-coding downstream 211528 56882 ~ 57758 (-)
G38401 NA non-coding upstream 46393 319827 ~ 320131 (-)
G38402 NA non-coding upstream 53248 326682 ~ 326986 (-)
G38404 NA non-coding upstream 69397 342831 ~ 343055 (-)
G38405 NA non-coding upstream 69927 343361 ~ 343651 (-)
G38418 NA non-coding upstream 157453 430887 ~ 441977 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 1471 221729 ~ 267815 (-)
G38400 NA other upstream 41547 314981 ~ 315528 (-)
LOC113524614 NA other upstream 731043 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 997011 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 1598499 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 1696329 1969763 ~ 1979549 (-)

Expression


Co-expression Network