Gene
RNA
| Item | Value |
|---|---|
| gene id | G38404 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 342831 ~ 343055 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU45479 | True | 225 | lncRNA | 0.41 | 1 | 342831 | 343055 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cdkn2a/b | LOC108263810 | coding | upstream | 403283 | 746338 ~ 755807 (-) |
| cxxc4 | cxxc4 | coding | upstream | 495456 | 838511 ~ 871353 (-) |
| ppa2 | ppa2,LOC108414713 | coding | upstream | 582896 | 925951 ~ 937449 (-) |
| ints12 | ints12 | coding | upstream | 722332 | 1065387 ~ 1069815 (-) |
| anp32b | anp32b | coding | upstream | 803074 | 1146129 ~ 1153350 (-) |
| G38402 | NA | non-coding | downstream | 15845 | 326682 ~ 326986 (-) |
| G38401 | NA | non-coding | downstream | 22700 | 319827 ~ 320131 (-) |
| G38393 | NA | non-coding | downstream | 69397 | 269286 ~ 273434 (-) |
| G38385 | NA | non-coding | downstream | 69916 | 216254 ~ 272915 (-) |
| LOC117596827 | LOC108261757,LOC108263779,LOC108261164 | non-coding | downstream | 106594 | 234969 ~ 236237 (-) |
| G38405 | NA | non-coding | upstream | 306 | 343361 ~ 343651 (-) |
| G38418 | NA | non-coding | upstream | 87832 | 430887 ~ 441977 (-) |
| G38421 | NA | non-coding | upstream | 101339 | 444394 ~ 449427 (-) |
| G38430 | NA | non-coding | upstream | 225697 | 568752 ~ 572675 (-) |
| G38467 | NA | non-coding | upstream | 348092 | 691147 ~ 697003 (-) |
| G38400 | NA | other | downstream | 27303 | 314981 ~ 315528 (-) |
| LOC117596825 | LOC108263784,LOC108261164,LOC108261316,LOC108263779 | other | downstream | 75016 | 221729 ~ 267815 (-) |
| LOC113524614 | NA | other | upstream | 661422 | 1004477 ~ 1007050 (-) |
| cntln | cntln,LOC108263774 | other | upstream | 927390 | 1270445 ~ 1369012 (-) |
| G39603 | casp6,LOC108263800,LOC108434124 | other | upstream | 1528878 | 1871933 ~ 1877583 (-) |
| lgi2b | LOC108263253,LOC108411628 | other | upstream | 1626708 | 1969763 ~ 1979549 (-) |
| G39720 | NA | other | upstream | 1830303 | 2173358 ~ 2173751 (-) |
