G38421


Basic Information

Item Value
gene id G38421
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 444394 ~ 449427 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45512
tggtcattttctctgtagttgttgcttcctgacttgtacttgttagagttgTGGTAGTcagtgtgggtgcagttgtttctgctgttgttggtgctgtggttgttggactttgtgttgtgtatactgttgtagtggtcaattctgatgttggttttgtggttgATGGTACAATTGCAGCTgaggttgtttcctctgtagtggttggttcctgacttgtacttgttggagtggaagtagttgtcaatgatgttgtttctgctgttgtaggtgctgttgttgttgtttctgttatgtatatagttgtagtggtagaatctgtttttgttgtagtggatggcacagttggagcgggtgttgtttcctttagagttgttggttcctgaattgtacttgttagagttgtgggtgcagttgtttctgctgttgttggtgctgtggttgttgtgtattcagtggtagtggtcaagcctattgttgttgttgcagttgatggtccagttgtcactgtggtcattttctctgtagttgttgcttcctgacttgtacttgttagagtggtagtcagtgtaggtgcagttgtttctgctgttgttggtgttgtggttgttggactttgtgttgtgtatactgttgtagtTGTCAATTCTGATGTTGGTTCTGTGGTCGATGGTACAATTGCAGCTGAGGTTGTTTCCACTGTAGTGGTTggttcctgacttgtacttgttggagtggaagtagttgtcaatgatgttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45512 True 756 lncRNA 0.43 2 444394 449427

Neighbor

gene id symbol gene type direction distance location
cdkn2a/b LOC108263810 coding upstream 296911 746338 ~ 755807 (-)
cxxc4 cxxc4 coding upstream 389084 838511 ~ 871353 (-)
ppa2 ppa2,LOC108414713 coding upstream 476524 925951 ~ 937449 (-)
ints12 ints12 coding upstream 615960 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 696702 1146129 ~ 1153350 (-)
G38418 NA non-coding downstream 2417 430887 ~ 441977 (-)
G38405 NA non-coding downstream 100743 343361 ~ 343651 (-)
G38404 NA non-coding downstream 101339 342831 ~ 343055 (-)
G38402 NA non-coding downstream 117408 326682 ~ 326986 (-)
G38401 NA non-coding downstream 124263 319827 ~ 320131 (-)
G38430 NA non-coding upstream 119325 568752 ~ 572675 (-)
G38467 NA non-coding upstream 241720 691147 ~ 697003 (-)
G38476 NA non-coding upstream 256552 705979 ~ 706336 (-)
G38480 NA non-coding upstream 258624 708051 ~ 709105 (-)
G38494 LOC108263789 non-coding upstream 272725 722152 ~ 744998 (-)
G38400 NA other downstream 128866 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 176579 221729 ~ 267815 (-)
LOC113524614 NA other upstream 555050 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 821018 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 1422506 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 1520336 1969763 ~ 1979549 (-)
G39720 NA other upstream 1723931 2173358 ~ 2173751 (-)

Expression


Co-expression Network