G38467


Basic Information

Item Value
gene id G38467
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 691147 ~ 697003 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45565
GCCTGACGTAGACCACTGCTGATCCATTGCTAGAGAAACACAGCATCATGTTGTATATCAgtaaaaattcagaatttagAAATGCATCACAGATGgtaatggaaatgtaaatctTGCTTAAACATCCATGAAAGAAATTACTCGTACGTTGTGGACGGAGATCCTGGAGAAGTCTGCACCGGAGTCGTAGTTGGATTAACCTTTGCAGATGTGTCTACAACAGAACAATTTTTAGTGAGAGGGTAAATTAATGGAACATAAATATGTTGAgaatccctaaccctaaccctaaccctagaaAGGTTATCAAATTGTGGTGTAACCTACCATTGACAGGCTGATTGATGACGTTTAGTAAATTGTATTCCATGTAACCATTAACTTGATCCTTTGAACTCCTATAATGAGGAGAAAGCAATATTGTCATGATACAAATGACTTGACAATAAGAATTTCACAGAGTAAATTCAGAACTGCAATCTTCTGCAGGAACTTACGTGAAGTTGGAGGTAGTGGGTTCAACTGGATCTGCACCAGATTTATTTAGAAGTGCGTTTACCTGGGGAGAAAAATcaagatattttaatgttaatattaactgtCCTGACAAATGTAATTGCACAGCATCAGGCTTCCTACAACGAGCAACTGACTGTTCAGTCAGTATTTAATCTtttgctgaaaactgaaaaagctTTCAACTTGCATCTGTGAAGACATGAAAGAATTCTTCttctaattataattaatattatgagTCATTTCCCACACCACAGCTGAGTCTATGACGATTTACGTTAAGGAAAGAAAGGGGTTAAAGGTGAAAATAAGTAGTGATGGGAGGAACGCTATCTGCTATGCACATGGTGATGTACACTCACAGCGTTATTGATGATGCTCTGCACTTGGGTGTAGGTGTCGTTCCTGAGGTTAGGGTTCTTGGGAATGCTGACGTTgctgatgctgaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45565 True 970 lncRNA 0.38 2 691147 697003

Neighbor

gene id symbol gene type direction distance location
cdkn2a/b LOC108263810 coding upstream 49335 746338 ~ 755807 (-)
cxxc4 cxxc4 coding upstream 141508 838511 ~ 871353 (-)
ppa2 ppa2,LOC108414713 coding upstream 228948 925951 ~ 937449 (-)
ints12 ints12 coding upstream 368384 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 449126 1146129 ~ 1153350 (-)
G38430 NA non-coding downstream 118472 568752 ~ 572675 (-)
G38421 NA non-coding downstream 241720 444394 ~ 449427 (-)
G38418 NA non-coding downstream 249170 430887 ~ 441977 (-)
G38405 NA non-coding downstream 347496 343361 ~ 343651 (-)
G38404 NA non-coding downstream 348092 342831 ~ 343055 (-)
G38476 NA non-coding upstream 8976 705979 ~ 706336 (-)
G38480 NA non-coding upstream 11048 708051 ~ 709105 (-)
G38494 LOC108263789 non-coding upstream 25149 722152 ~ 744998 (-)
G38496 NA non-coding upstream 26471 723474 ~ 728816 (-)
G39293 NA non-coding upstream 157879 854882 ~ 855602 (-)
G38400 NA other downstream 375619 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 423332 221729 ~ 267815 (-)
LOC113524614 NA other upstream 307474 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 573442 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 1174930 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 1272760 1969763 ~ 1979549 (-)
G39720 NA other upstream 1476355 2173358 ~ 2173751 (-)

Expression


Co-expression Network