G38481


Basic Information

Item Value
gene id G38481
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 710335 ~ 710574 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45580
aatgcagcagccagagtccttactagaaccagaagatatgaccacatcacccctatcttatccacactgcattggctcccaatcaaatttcgtattgattataaaatactactattgacctataaagcactaaatggtctcgcgccacagtacctgagcgaacttttggtcttttatgatccgtcacgcctactcagatcaaaaggtgcaggctatttgttggtacctcgaatagtgcgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45580 True 240 lncRNA 0.43 1 710335 710574

Neighbor

gene id symbol gene type direction distance location
LOC113525488 NA coding upstream 7768 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 20832 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 21549 669887 ~ 688786 (+)
LOC113525482 NA coding upstream 77805 625093 ~ 632530 (+)
LOC113525486 NA coding upstream 246276 450594 ~ 464059 (+)
LOC117596917 NA coding downstream 274974 985548 ~ 988804 (+)
LOC113524625 LOC108263780 coding downstream 306820 1017394 ~ 1025345 (+)
arhgef38 arhgef38 coding downstream 328101 1038675 ~ 1061874 (+)
uso1 uso1 coding downstream 362163 1072737 ~ 1094921 (+)
hemgn NA coding downstream 452045 1162619 ~ 1165369 (+)
G38361 NA non-coding upstream 11137 688670 ~ 699198 (+)
LOC117596830 NA non-coding upstream 17185 690885 ~ 693150 (+)
LOC117596828 NA non-coding upstream 85937 623355 ~ 624398 (+)
G38324 NA non-coding upstream 370438 338816 ~ 339897 (+)
G38323 NA non-coding upstream 390315 319816 ~ 320020 (+)
G38484 NA non-coding downstream 16064 726638 ~ 727365 (+)
G38489 NA non-coding downstream 29943 740517 ~ 741198 (+)
G38503 NA non-coding downstream 65462 776036 ~ 776249 (+)
G38514 NA non-coding downstream 111700 822274 ~ 822824 (+)
G38522 NA non-coding downstream 121159 831733 ~ 831965 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 496606 200601 ~ 213729 (+)
mtap mtap,LOC108263789 other downstream 11553 722127 ~ 744999 (+)
G38577 NA other downstream 353398 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 392204 1102778 ~ 1141934 (+)
trmo trmo other downstream 455271 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 483645 1194219 ~ 1224601 (+)

Expression


Co-expression Network