G38484


Basic Information

Item Value
gene id G38484
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 726638 ~ 727365 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45585
gtgtgtgtgtgtgtattatataagcgtgtgtgtgtgtattataagcgtgtgtgtgtgtgtattataagcgtgtgtgtgtgtgtgtattataagcgtgtgtgtgtgtattataagcgtgtgtgtgtattataagcgtgtgtgtgtgtgtattataagcgtgtgtgtgtgtattataagcgtgtgtgtgtgtgtgtattataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45585 True 201 lncRNA 0.38 2 726638 727365

Neighbor

gene id symbol gene type direction distance location
LOC113525488 NA coding upstream 24071 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 37135 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 37852 669887 ~ 688786 (+)
LOC113525482 NA coding upstream 94108 625093 ~ 632530 (+)
LOC113525486 NA coding upstream 262579 450594 ~ 464059 (+)
LOC117596917 NA coding downstream 258183 985548 ~ 988804 (+)
LOC113524625 LOC108263780 coding downstream 290029 1017394 ~ 1025345 (+)
arhgef38 arhgef38 coding downstream 311310 1038675 ~ 1061874 (+)
uso1 uso1 coding downstream 345372 1072737 ~ 1094921 (+)
hemgn NA coding downstream 435254 1162619 ~ 1165369 (+)
G38481 NA non-coding upstream 16064 710335 ~ 710574 (+)
G38361 NA non-coding upstream 27440 688670 ~ 699198 (+)
LOC117596830 NA non-coding upstream 33488 690885 ~ 693150 (+)
LOC117596828 NA non-coding upstream 102240 623355 ~ 624398 (+)
G38324 NA non-coding upstream 386741 338816 ~ 339897 (+)
G38489 NA non-coding downstream 13152 740517 ~ 741198 (+)
G38503 NA non-coding downstream 48671 776036 ~ 776249 (+)
G38514 NA non-coding downstream 94909 822274 ~ 822824 (+)
G38522 NA non-coding downstream 104368 831733 ~ 831965 (+)
G38531 NA non-coding downstream 127507 854872 ~ 856044 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 512909 200601 ~ 213729 (+)
G38577 NA other downstream 336607 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 375413 1102778 ~ 1141934 (+)
trmo trmo other downstream 438480 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 466854 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 1256282 1983647 ~ 1997265 (+)

Expression


Co-expression Network