G38494 (LOC108263789)


Basic Information

Item Value
gene id G38494
gene name LOC108263789
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 722152 ~ 744998 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45596
GAGggaaaagttttatttgtttattcagagTGAAGATTGACATGATTTACTTTTCAaatcatttcaatttttttctgtaaatgtaaaaaaaaaaacacaaacacacacacacatacacacaggtcaCTTACCActtgctagtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcactcacCCTCTCCCCCCGCCGAGTCCTTCAGCCTGTTGGCTCTTTTATAAAACGACTCCCGCATTTCGATCATCTTGAGTCTCCGTTTGAGCAGAGTGTTCTCCTTCTGGCTCTTCAGCATCTCCATCTGTAACTCAGTGTAACTCACCTCCACAACTTTACAGATCTCCGCCACAGCGGCGTTAGCGAACACCTCCATCACCGAGGCGATCTGCGTCTGAAACGCTAACACACTCGACATGCTGCTCACCTCCTACAAGCCCTTAATAAACCCGTTATTAACCTCTAACGAGCGCTTACAGGAGCTTCTGTTTTCTACACCAAA

Function

NR:

description
PREDICTED: zinc finger protein 271-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45596 True 527 lncRNA 0.48 2 722152 744998

Neighbor

gene id symbol gene type direction distance location
cdkn2a/b LOC108263810 coding upstream 1340 746338 ~ 755807 (-)
cxxc4 cxxc4 coding upstream 93513 838511 ~ 871353 (-)
ppa2 ppa2,LOC108414713 coding upstream 180953 925951 ~ 937449 (-)
ints12 ints12 coding upstream 320389 1065387 ~ 1069815 (-)
anp32b anp32b coding upstream 401131 1146129 ~ 1153350 (-)
G38480 NA non-coding downstream 13047 708051 ~ 709105 (-)
G38476 NA non-coding downstream 15816 705979 ~ 706336 (-)
G38467 NA non-coding downstream 25149 691147 ~ 697003 (-)
G38430 NA non-coding downstream 149477 568752 ~ 572675 (-)
G38421 NA non-coding downstream 272725 444394 ~ 449427 (-)
G39293 NA non-coding upstream 109884 854882 ~ 855602 (-)
G39303 NA non-coding upstream 156950 901948 ~ 907408 (-)
G39304 NA non-coding upstream 157122 902120 ~ 905871 (-)
G39306 NA non-coding upstream 159000 903998 ~ 907834 (-)
G39312 tet2,LOC108414712 non-coding upstream 176129 921127 ~ 925526 (-)
G38400 NA other downstream 406624 314981 ~ 315528 (-)
LOC117596825 LOC108263784,LOC108261164,LOC108261316,LOC108263779 other downstream 454337 221729 ~ 267815 (-)
LOC113524614 NA other upstream 259479 1004477 ~ 1007050 (-)
cntln cntln,LOC108263774 other upstream 525447 1270445 ~ 1369012 (-)
G39603 casp6,LOC108263800,LOC108434124 other upstream 1126935 1871933 ~ 1877583 (-)
lgi2b LOC108263253,LOC108411628 other upstream 1224765 1969763 ~ 1979549 (-)
G39720 NA other upstream 1428360 2173358 ~ 2173751 (-)

Expression


Co-expression Network