G38503


Basic Information

Item Value
gene id G38503
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 776036 ~ 776249 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45613
GTCCCATTCCACCCCCCTCCACCCCACTCTATACCACTGAGTCCCATTACACCCCTCTCCACCCCACTCTGTACCACTAAGTCCCATTACACCCCTCTCCACCCCACTCTGTACCACTAAGTCCCATTACACCCCTCTCCACCCCACTCTGTACCACTGAGTCCCATTACACCCCTCTCCACCCCACTCTGTACCACTAAGTCCCATTACACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45613 True 214 lncRNA 0.43 1 776036 776249

Neighbor

gene id symbol gene type direction distance location
LOC113525488 NA coding upstream 73469 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 86533 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 87250 669887 ~ 688786 (+)
LOC113525482 NA coding upstream 143506 625093 ~ 632530 (+)
LOC113525486 NA coding upstream 311977 450594 ~ 464059 (+)
LOC117596917 NA coding downstream 209299 985548 ~ 988804 (+)
LOC113524625 LOC108263780 coding downstream 241145 1017394 ~ 1025345 (+)
arhgef38 arhgef38 coding downstream 262426 1038675 ~ 1061874 (+)
uso1 uso1 coding downstream 296488 1072737 ~ 1094921 (+)
hemgn NA coding downstream 386370 1162619 ~ 1165369 (+)
G38489 NA non-coding upstream 34838 740517 ~ 741198 (+)
G38484 NA non-coding upstream 48671 726638 ~ 727365 (+)
G38481 NA non-coding upstream 65462 710335 ~ 710574 (+)
G38361 NA non-coding upstream 76838 688670 ~ 699198 (+)
LOC117596830 NA non-coding upstream 82886 690885 ~ 693150 (+)
G38514 NA non-coding downstream 46025 822274 ~ 822824 (+)
G38522 NA non-coding downstream 55484 831733 ~ 831965 (+)
G38531 NA non-coding downstream 78623 854872 ~ 856044 (+)
G38541 cxxc4,LOC103148507 non-coding downstream 89937 866186 ~ 871573 (+)
G38547 NA non-coding downstream 123987 900236 ~ 904652 (+)
mtap mtap,LOC108263789 other upstream 31037 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 562307 200601 ~ 213729 (+)
G38577 NA other downstream 287723 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 326529 1102778 ~ 1141934 (+)
trmo trmo other downstream 389596 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 417970 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 1207398 1983647 ~ 1997265 (+)

Expression


Co-expression Network