G38522


Basic Information

Item Value
gene id G38522
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 831733 ~ 831965 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45634
GAAAAACGACAGGcaggaaataaataatgaaaaaggaCGAGTGAGcatttctcttgctttctctccttttttctgtctttcttttactATTTAATATCTACAGTTTTCTGCCCATCagcacctgtctctctctctctctctctctctctctcactgtctctctctctctctctctctctctgtctctctctgaattCATTTTTTCAACCTCAGATAGCTTTACTGCCACTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45634 True 233 lncRNA 0.36 1 831733 831965

Neighbor

gene id symbol gene type direction distance location
LOC113525488 NA coding upstream 129166 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 142230 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 142947 669887 ~ 688786 (+)
LOC113525482 NA coding upstream 199203 625093 ~ 632530 (+)
LOC113525486 NA coding upstream 367674 450594 ~ 464059 (+)
LOC117596917 NA coding downstream 153583 985548 ~ 988804 (+)
LOC113524625 LOC108263780 coding downstream 185429 1017394 ~ 1025345 (+)
arhgef38 arhgef38 coding downstream 206710 1038675 ~ 1061874 (+)
uso1 uso1 coding downstream 240772 1072737 ~ 1094921 (+)
hemgn NA coding downstream 330654 1162619 ~ 1165369 (+)
G38514 NA non-coding upstream 8909 822274 ~ 822824 (+)
G38503 NA non-coding upstream 55484 776036 ~ 776249 (+)
G38489 NA non-coding upstream 90535 740517 ~ 741198 (+)
G38484 NA non-coding upstream 104368 726638 ~ 727365 (+)
G38481 NA non-coding upstream 121159 710335 ~ 710574 (+)
G38531 NA non-coding downstream 22907 854872 ~ 856044 (+)
G38541 cxxc4,LOC103148507 non-coding downstream 34221 866186 ~ 871573 (+)
G38547 NA non-coding downstream 68271 900236 ~ 904652 (+)
G38548 NA non-coding downstream 69969 901934 ~ 907387 (+)
G38552 NA non-coding downstream 90688 922653 ~ 925538 (+)
mtap mtap,LOC108263789 other upstream 86734 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 618004 200601 ~ 213729 (+)
G38577 NA other downstream 232007 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 270813 1102778 ~ 1141934 (+)
trmo trmo other downstream 333880 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 362254 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 1151682 1983647 ~ 1997265 (+)

Expression


Co-expression Network