G38541 (cxxc4,LOC103148507)


Basic Information

Item Value
gene id G38541
gene name cxxc4,LOC103148507
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 866186 ~ 871573 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45659
CCTCGAGTGATGATCCCGGTTTCTTCTTCAGTTCCTCGCATTTGCGGAATTTGCAGATCTGGTGTCCGGTCTTGCGGTTTCGGCAGCTGCTACACACGCCGCAGTTAATGAGCCGCCTGCAGGGGGCGCACACGCCGCAGCGCTTCCTCTTTTTCTTGGCGGCGTTTCCTCCGGACGCAGGAGAGGAAATGTGATtactgtgattattattatgctgcTGGCAGTCTGCCAGGTTGGCGATCTGAAACGCGCTGTCTGTGACGGCGGATGCGGAGGCGGGAGAGTGCAGTGCCGTCATGACGATGACCCCGGGGGGTAAAGAGATTCCCCCCAGAGCAGGGAGGGCGGAGAACGCCGGGTTCATTATCTCCGCTTCAGCAGCGCCGCCGCACTTCAGCTTGTTAACACAGTCCCCCGCTAACGGCCTGCAGTGCTCCGGCGATAACGTGGACAGGAAGTTACCGTTCGCCATCTGCAGAGTCTCGGGTTTCCCGGGCCGCTGAGACGACTCGCTCCTGGTTCTGTTCGGGTGGATCGGCGCCGACTTGCGCCCCCAGAGCACGGCGTTGTCACAGTTCCACGGCGAAACACCAATCCGCGCGCTGGGAAAGATGGGCGTGGTGATGCGGGCGATCTTGGCACTCTGAGGAAACGCGCCATTGGTTTTGTAAAAGTTTGCGAAAGAGCGGTAACGTTCGATTTCTGCGTTGTAATCCAACAGCTGGTTTAATCCGGCTTCCTGAAGGGCGTCCTTTTGTAACAGAGACACGTCTGCGTTAGCGCCGCTCTCGATGCAGAGCGCACTGTTTATGTTCGACATGGCCGCTCGCTGTGATCAGCGCTGTAGCAGAGACGTCAAGCGGCGATGGGGTCCGTCCTTCTTCAACGCCAAAACTCCTCCGAGACTAATGCGTTAGCATCCTGCGATTATTCCACTGCGACCTACCGggatccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagaagtccGGTCTCCTGTTAGCGGCTcatgatggacagatgaaggAGAAGAGCTCAGGACAGAAGCGCCATCCTCCCGCTCTGAGACAcagattagatttaaaaaatttaaaaaaaaaaagaaagaaagaaagaaagaaagaaaagaaaagaaagaaggggaaaagaaaaaaagaaagatgcaCGAGAAACGAACCGGAAACGcgagaaaaataaagaactaTGGCGGCGCGAGCTcgtgcctgtctgtctgcctgcctggcGCGCGCAGCCGTGAATAAAAGCGGCACAACCGAGAGgagatgattgtgtgtgtgtgtgtgtgtgtgtgtg

Function

symbol description
cxxc4 Predicted to enable methyl-CpG binding activity. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human CXXC4 (CXXC finger protein 4).

NR:

description
PREDICTED: CXXC-type zinc finger protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45659 True 1353 lncRNA 0.55 2 866186 871573

Neighbor

gene id symbol gene type direction distance location
LOC113525488 NA coding upstream 163619 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 176683 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 177400 669887 ~ 688786 (+)
LOC113525482 NA coding upstream 233656 625093 ~ 632530 (+)
LOC113525486 NA coding upstream 402127 450594 ~ 464059 (+)
LOC117596917 NA coding downstream 113975 985548 ~ 988804 (+)
LOC113524625 LOC108263780 coding downstream 145821 1017394 ~ 1025345 (+)
arhgef38 arhgef38 coding downstream 167102 1038675 ~ 1061874 (+)
uso1 uso1 coding downstream 201164 1072737 ~ 1094921 (+)
hemgn NA coding downstream 291046 1162619 ~ 1165369 (+)
G38531 NA non-coding upstream 10142 854872 ~ 856044 (+)
G38522 NA non-coding upstream 34221 831733 ~ 831965 (+)
G38514 NA non-coding upstream 43362 822274 ~ 822824 (+)
G38503 NA non-coding upstream 89937 776036 ~ 776249 (+)
G38489 NA non-coding upstream 124988 740517 ~ 741198 (+)
G38547 NA non-coding downstream 28663 900236 ~ 904652 (+)
G38548 NA non-coding downstream 30361 901934 ~ 907387 (+)
G38552 NA non-coding downstream 51080 922653 ~ 925538 (+)
G38563 NA non-coding downstream 87847 959420 ~ 959678 (+)
G38564 NA non-coding downstream 98570 970143 ~ 970350 (+)
mtap mtap,LOC108263789 other upstream 121187 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 652457 200601 ~ 213729 (+)
G38577 NA other downstream 192399 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 231205 1102778 ~ 1141934 (+)
trmo trmo other downstream 294272 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 322646 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 1112074 1983647 ~ 1997265 (+)

Expression


Co-expression Network