G38548


Basic Information

Item Value
gene id G38548
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 901934 ~ 907387 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45666
tgtagtgtgtggaatgatgtagtgtgtggaataatgtagtgtgtggaataatgtagtgtatggaataatgtagtgtgtggaatgatgtagtgtatggaataatgtagtgtgtggaataatgtagtgtatggaataatgtagtgtgtggaacaatgtagtgtatggaataatgtagtgtgtggaataatgtagtgtgtggaacactgtagtgtgtggaataatgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45666 True 225 lncRNA 0.36 2 901934 907387

Neighbor

gene id symbol gene type direction distance location
LOC113525488 NA coding upstream 199367 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 212431 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 213148 669887 ~ 688786 (+)
LOC113525482 NA coding upstream 269404 625093 ~ 632530 (+)
LOC113525486 NA coding upstream 437875 450594 ~ 464059 (+)
LOC117596917 NA coding downstream 78161 985548 ~ 988804 (+)
LOC113524625 LOC108263780 coding downstream 110007 1017394 ~ 1025345 (+)
arhgef38 arhgef38 coding downstream 131288 1038675 ~ 1061874 (+)
uso1 uso1 coding downstream 165350 1072737 ~ 1094921 (+)
hemgn NA coding downstream 255232 1162619 ~ 1165369 (+)
G38541 cxxc4,LOC103148507 non-coding upstream 30361 866186 ~ 871573 (+)
G38531 NA non-coding upstream 45890 854872 ~ 856044 (+)
G38522 NA non-coding upstream 69969 831733 ~ 831965 (+)
G38514 NA non-coding upstream 79110 822274 ~ 822824 (+)
G38503 NA non-coding upstream 125685 776036 ~ 776249 (+)
G38552 NA non-coding downstream 15266 922653 ~ 925538 (+)
G38563 NA non-coding downstream 52033 959420 ~ 959678 (+)
G38564 NA non-coding downstream 62756 970143 ~ 970350 (+)
G38566 NA non-coding downstream 67963 975350 ~ 975695 (+)
G38570 NA non-coding downstream 84854 992241 ~ 992600 (+)
mtap mtap,LOC108263789 other upstream 156935 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 688205 200601 ~ 213729 (+)
G38577 NA other downstream 156585 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 195391 1102778 ~ 1141934 (+)
trmo trmo other downstream 258458 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 286832 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 1076260 1983647 ~ 1997265 (+)

Expression


Co-expression Network