G38577


Basic Information

Item Value
gene id G38577
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1063972 ~ 1065331 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45707
GATGAAGGCGCCGTGATGAAGACGCCGTGATGAAGGCCGTGATGAAGGCGCCGTGATGAAGGCGCCGTGATGAAGGCGCCGTGATGAAGACGCCGTGATGAAGACGCCGTGATGAAGGCCGTGATGAAGGCCGTGATGAAGGCGCCGTGATGAAGCGCCGCGATGAAGACGCCGTGATGAAGACCAAACCCGCACTAAGAGACGAACACTCTCAGCACTTTGATCTAcacgtgtgtgtgcagtgtttcagTTCACTGATGAAGGATTTAATCAGAGTATATAATGCTTTAATATAAATAGAGATCTATATGTTTAGCTATATATTTACAGAGCGTATATGATTATAGAAATGCTGAAGAATAGTTTTATAAACAGATTATgagtaaaatttaaatgtgctgatgaataaatctattttaaacCTGACTATTCGTGTGCTTTATGACACCAGGCCAACGTTTCCGCTTGTTTTATTAAAGGTGTTTATTAAAAGTACGAGCTGATCAGTGCTGCTGCTTTACAACAAACCAGGCACagagagcaacacacacacacacacacacacacacacacacacacacacacgagcagcGTCTACACACACCTTCAAGTATTAGTGCTGAATTGTGGGtaattcctttccttttctctctttctcactgatTTATTACTCATTTGGGATTTGGCcattcctccctctctctctctctctctctctctctctctctctcctcccctctctctctctctctccccactcctctctctcctctctctctctctctttctctctctctctccatgtttgTCCCTTTCTTTGAgaaactatttattattattaatttattattacataatgttttgttctgtctgtctatgatgtttattttctttttcctggcTTTCTGCATTCTGtttgtgtctttctttcctttttttctgtctttcttattatctgtttgtttatttgtctgtccatttctccatctgtccatcagtcTCTGTCGATATGTccaaaacagacagacagacagacagatggagagacaggaaATGTACTTtgtaatttataatttgtctatttctgcttttctatctgcctttttttctttctttccttccttccttcctgtctgtccatcttttgtactctgtctttctttccttcctttttttcaggctgtctctctctccgtctctctctctctctttttaaaggtgttcatttattattcatttctgattttggtgtcttgtttgtctctctctccctcacctTACTTCCTgtcctccttctccctctctctctccctctacctccctctctctccctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45707 True 1334 TUCP 0.42 2 1063972 1065331

Neighbor

gene id symbol gene type direction distance location
arhgef38 arhgef38 coding upstream 2098 1038675 ~ 1061874 (+)
LOC113524625 LOC108263780 coding upstream 38627 1017394 ~ 1025345 (+)
LOC117596917 NA coding upstream 75168 985548 ~ 988804 (+)
LOC113525488 NA coding upstream 361405 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 374469 689114 ~ 689503 (+)
uso1 uso1 coding downstream 7406 1072737 ~ 1094921 (+)
hemgn NA coding downstream 97288 1162619 ~ 1165369 (+)
LOC113524617 NA coding downstream 106554 1171885 ~ 1176844 (+)
spag5 spag5 coding downstream 114147 1179478 ~ 1191246 (+)
foxe1 foxe1 coding downstream 183742 1249073 ~ 1257956 (+)
G38582 NA non-coding upstream 14543 1046243 ~ 1049429 (+)
G38571 NA non-coding upstream 70677 993009 ~ 993295 (+)
G38570 NA non-coding upstream 71372 992241 ~ 992600 (+)
G38566 NA non-coding upstream 88277 975350 ~ 975695 (+)
G38564 NA non-coding upstream 93622 970143 ~ 970350 (+)
G38585 NA non-coding downstream 2916 1068247 ~ 1069317 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding downstream 53963 1119294 ~ 1153326 (+)
G38593 NA non-coding downstream 71333 1136664 ~ 1137026 (+)
G38596 NA non-coding downstream 93095 1158426 ~ 1159328 (+)
G38608 NA non-coding downstream 185469 1250800 ~ 1772777 (+)
mtap mtap,LOC108263789 other upstream 318973 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 850243 200601 ~ 213729 (+)
coro2a coro2a other downstream 37447 1102778 ~ 1141934 (+)
trmo trmo other downstream 100514 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 128888 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 918316 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 960157 2025488 ~ 2091343 (+)

Expression


Co-expression Network