G38582


Basic Information

Item Value
gene id G38582
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1046243 ~ 1049429 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45713
cgctagtctgcgctttatcccgtttactgtaacgctagtctgcgctttatcccgtttactgtaacgctagtctgcgctttatcccgtttactgtaacgctagtctgcgctttatcccgtttactgtagcgctagtctgcgctttatcCCGTTTACTGTAGCGCTTAtctgcgctttagcccgtttactgtaacgctagtctgcgctttagcCCGTTTACTGTAgcgcta
>TU45714
TAGTCTGCGCTTTATcccgtttactgtaacgctagtctgcgctttagcccgtttactgtaacgctagtctgcgctttatcccgtttactgtaacgctagtctgcgctttatcccgtttactgtaacgctagtctgcgctttagcccgtttactgtaacgctagtctgcgctttagcccgtttactgtaacgctagtctgcgctttagcCCGTTTACTGTAAcgctagtctgcgctttatcccgtttactgtaacgctagtctgcgctttatcccgtttactgtagcgctagtctgcgctttatcccgtttactgtaacgctagtctgcgctttagcccgtttactgtaacgctagtctgcgctttatcccgtttactgtaacgctagtctgcgctttat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45713 False 229 lncRNA 0.45 2 1048372 1049429
TU45714 True 399 lncRNA 0.48 3 1046243 1049279

Neighbor

gene id symbol gene type direction distance location
LOC113524625 LOC108263780 coding upstream 20898 1017394 ~ 1025345 (+)
LOC117596917 NA coding upstream 57439 985548 ~ 988804 (+)
LOC113525488 NA coding upstream 343676 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 356740 689114 ~ 689503 (+)
LOC113525487 NA coding upstream 357457 669887 ~ 688786 (+)
uso1 uso1 coding downstream 23308 1072737 ~ 1094921 (+)
hemgn NA coding downstream 113190 1162619 ~ 1165369 (+)
LOC113524617 NA coding downstream 122456 1171885 ~ 1176844 (+)
spag5 spag5 coding downstream 130049 1179478 ~ 1191246 (+)
foxe1 foxe1 coding downstream 199644 1249073 ~ 1257956 (+)
G38571 NA non-coding upstream 52948 993009 ~ 993295 (+)
G38570 NA non-coding upstream 53643 992241 ~ 992600 (+)
G38566 NA non-coding upstream 70548 975350 ~ 975695 (+)
G38564 NA non-coding upstream 75893 970143 ~ 970350 (+)
G38563 NA non-coding upstream 86565 959420 ~ 959678 (+)
G38585 NA non-coding downstream 18818 1068247 ~ 1069317 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding downstream 69865 1119294 ~ 1153326 (+)
G38593 NA non-coding downstream 87235 1136664 ~ 1137026 (+)
G38596 NA non-coding downstream 108997 1158426 ~ 1159328 (+)
G38608 NA non-coding downstream 201371 1250800 ~ 1772777 (+)
mtap mtap,LOC108263789 other upstream 301244 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 832514 200601 ~ 213729 (+)
G38577 NA other downstream 14543 1063972 ~ 1065331 (+)
coro2a coro2a other downstream 53349 1102778 ~ 1141934 (+)
trmo trmo other downstream 116416 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 144790 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 934218 1983647 ~ 1997265 (+)

Expression


Co-expression Network