G38585


Basic Information

Item Value
gene id G38585
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1068247 ~ 1069317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45717
AGCGCTTTGTGTTCCCGAAAAGACACTTTTTTtcaaaagataaagaaaatttaaaactattttcgCTGTTTTTGCgtaaactgtaaaaacacacGCTTTTGAAATCGACCTGCGCGTGCCTGCGGTACGTGTCATGAATACGCTACGACTCGGTTTATCATGAAAGTTGCTTCTTTGTGCTCgttaatttagtttaatttcaCTTTTGTGTCGTGGAGACGGAATATGATCGGCTCCTGGGTCCGGATTTCCGAGTGAGCTAGAAATCAGATATCGTTGCGGCTGAACAGCGTTTTTCCGCACATGGATGCGTAGAGGTCATCTCTGAGGACGTGCACAAGCAACACTCCAAACGACCGCCATCTTGAAAATGCGTAAGTAAAAGTAAGTATAATCCAGGCTTTAGACGCCGTAACTGTCTTTTACGTTTACTGTTTATTCGTGGCGAGGCAGCTAGCTTACTAAAGATCACCTCAGAAAAGGAAAATCCTCAAAACGTACGAAACTTCGTTGCACCAAAAGTGAAAATTGGATACGTGGAAGTCGGAAATCTCGATATCGCTGAAATAAATGAGGGATTTTTAcgtaaaattatataaaatcgAGTGTTTTTGAGCACCTTCTCAGCAGGTCTTTTCTCAACTTCCTTCTTGCTTTTCTCCGAGCTGCTGGATTTACCGCtggacgatgatgatgatgaagaagatgacgacgatgacgaagatgacgacgatgatgatgaagatgagcCGGACGTTGATTTGGAGTCCTGTTTGATCAGTTTGGGTACCGACGCTTTGGAAAGCTCGGCGACCTTCAGAGAGGTACGATACGCTGAATCACTTCCTCTGGACAGAGACTCGTCCAGCAGAGCCTTCAGCTTCTCGGCGGAGTCTTTGCTCTTGGAGTGGAGGTACCCCAAACCCTTCAGGAAAACAGGGTCCAGCTCCAAACTCACAGTTCCAGCCATGAC

Function

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 D2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45717 True 973 lncRNA 0.45 2 1068247 1069317

Neighbor

gene id symbol gene type direction distance location
arhgef38 arhgef38 coding upstream 6373 1038675 ~ 1061874 (+)
LOC113524625 LOC108263780 coding upstream 42902 1017394 ~ 1025345 (+)
LOC117596917 NA coding upstream 79443 985548 ~ 988804 (+)
LOC113525488 NA coding upstream 365680 698177 ~ 702567 (+)
LOC117596906 NA coding upstream 378744 689114 ~ 689503 (+)
uso1 uso1 coding downstream 3420 1072737 ~ 1094921 (+)
hemgn NA coding downstream 93302 1162619 ~ 1165369 (+)
LOC113524617 NA coding downstream 102568 1171885 ~ 1176844 (+)
spag5 spag5 coding downstream 110161 1179478 ~ 1191246 (+)
foxe1 foxe1 coding downstream 179756 1249073 ~ 1257956 (+)
G38582 NA non-coding upstream 18818 1046243 ~ 1049429 (+)
G38571 NA non-coding upstream 74952 993009 ~ 993295 (+)
G38570 NA non-coding upstream 75647 992241 ~ 992600 (+)
G38566 NA non-coding upstream 92552 975350 ~ 975695 (+)
G38564 NA non-coding upstream 97897 970143 ~ 970350 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding downstream 49977 1119294 ~ 1153326 (+)
G38593 NA non-coding downstream 67347 1136664 ~ 1137026 (+)
G38596 NA non-coding downstream 89109 1158426 ~ 1159328 (+)
G38608 NA non-coding downstream 181483 1250800 ~ 1772777 (+)
G38623 NA non-coding downstream 200880 1270197 ~ 1271301 (+)
G38577 NA other upstream 2916 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 323248 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 854518 200601 ~ 213729 (+)
coro2a coro2a other downstream 33461 1102778 ~ 1141934 (+)
trmo trmo other downstream 96528 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 124902 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 914330 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 956171 2025488 ~ 2091343 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G286977 NA non-coding CI01000072 null 4694730 ~ 4699986 (-)
mexican tetra (Astyanax mexicanus) G238934 ints12 non-coding NW_019171037.1 APWO02000635.1 346636 ~ 350316 (+)