G38589 (anp32b,an32b,LOC106602331,LOC106602332,LOC106610273)


Basic Information

Item Value
gene id G38589
gene name anp32b,an32b,LOC106602331,LOC106602332,LOC106610273
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1119294 ~ 1153326 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45725
ACAAGCGAagcacaaaatgtcattttatttacaaagttTGTTTTCTTCGTCTTTCAGAAAGTACAAATTTAGCAGTGACACGGAGGTGTGTGACGAGCCGCCACGCTAAAAATGATGGCTCGCTCGTCACACGGTTGCTATAGCGATAATCTTATTGAGAAAGTGAAACAAAAAGGCAAAgtcaaacaataaaaataagaaaagaggaaaaaataaacaattctccaacaaaatattaaaagcaCAGACCCAAAACTAGATCCCCAAAGTCCTCACACAggcacttcacacacacacacacacacacacacacaggagaggagggaaggggcggagcttaagaGAGACATGGGCGGGGTTTGGAGTTGAACATGTGGAATGCGGAGTGGACTGACCAATAGCGTGCTCTCTCGGTTCCACATGCCCCGCCCACGCAGTACAGTCTTGTCCCCAATGGGGTAGAAACGCAGGGAGGGAAAAACGAGGGGCGGGGCAACTGAGGTCAGTGAGTAAAAAAAGGGAGGGTGGGGTTATGGAGGAAGCTGATTGGCTGGTTGGATTTTattcatcgtcatcatcatcgtcatcctcGTCTTCATCGTCGgcttctctcttccttttctctcccttcGTTACTTCTTcttcatcatcttcatcatcatcctcgTCTTCATCGTCCACCTCTCCGTCCTGACCGAAGTCTTCCTCCTCATCCTCTCCGCTGACGTCTTCATCGTCTTCCTCTCCTTCTACCTCGTCCTCATCTTCGTCCTCGTCCTCTTCTTCATCAAACTCTTCCTCCTCGccgtcctcctcctcttcctcctcgccCTCCTCGTCTTCGTCCTCGTCCACGCCGTCCACCTCGCCGTCCGAGTCGGAAGCCTCGCGGTCCTCGGCGTCGTATCCGTCCAGGTACGTGAGCTGAGGCAGCAGCTTGAACACGCTCTCCCGATAACCGTTCAGATTCGTCACTTCACAGTTGAACAGATCGAGACTCTTCAAGTGGTCGAGTTTTTTCAGAGGTTCCAAGGTGCTGATGTCTTTCAGTTTGTTACCACTCAGGTCTAGATGCGTCAGGTTTGGGAGTTTCTCCGCTAAAACGTCGAGGCCGCCCGAGATTCTGTTATCACTGAGTTCCAGCTTTTTTGAGCTTGGCGAGTTTGGGCAGGTTAGACACGGAGATTAATCCGACGTTTATCAAACTGAGATATTCGAGATTGACGAATTCGGCAGTGAGGCCTTCGATCTTCCCCTCGTTCGATCTGCAGTTCTCCAGAACGAGTTCCTGCacATCAGATGGTGTCCTGTTTCTCAGCTCCAAATGGATCCTCTTTTTCATGTCCATGCTGCCAGGctggtttttttatttatttaaaaaaaaaaaaaaaaaagaaaagaaaaaaaaaagaaaaaatctgctgtgcactttctgtcttttctcttggGGTTTGGAGGAGATTTATACCGAGCCCAGAAGACAGGAAAGCtttaaaagaggaaagaaataaGGGATTGAGTGCAAACGAGCtaaactccttccaaaaacacaCCACGCCAACTTaaactccaacacacactc
>TU45727
ttcacacacacacacacacacacacacagagaggagggaaggggcggagcttaagaGAGACATGGGCGGGGTTTGGAGTTGAACATGTGGAATGCGGAGTGGACTGACCAATAGCGTGCTCTCTCGGTTCCACATGCCCCGCCCACGCAGTACAGTCTTGTCCCCAATGGGGTAGAAACGCAGGGAGGGAAAAACGAGGGGCGGGGCAACTGAGGTCAGTGAGTAAAAAAAGGGAGGGTGGGGTTATGGAGGAAGCTGATTGGCTGGTTGGATTTTattcatcgtcatcatcatcgtcatcctcGTCTTCATCGTCGgcttctctcttccttttctctcccttcGTTACTTCTTCTTCTGTCAGAAAAGCAATTACAGATCAGTTTCCCGCAATTTACACGTCCGTAacttagttaaataaataaacaaacaaacaaacaaacaaacacactgctgcaa
>TU45729
acacacacacacacacacacacacacacagagaggagggaaggggcggagcttaagaGAGACATGGGCGGGGTTTGGAGTTGAACATGTGGAATGCGGAGTGGACTGACCAATAGCGTGCTCTCTCGGTTCCACATGCCCCGCCCACGCAGTACAGTCTTGTCCCCAATGGGGTAGAAACGCAGGGAGGGAAAAACGAGGGGCGGGGCAACTGAGGTCAGTGAGTAAAAAAAGGGAGGGTGGGGTTATGGAGGAAGCTGATTGGCTGGTTGGATTTTattcatcgtcatcatcatcgtcatcctcGTCTTCATCGTCGgcttctctcttccttttctctcccttcGTTACTTCTTcttcatcatcttcatcatcatcctcgTCTTCATCGTCCACCTCTCCGTCCTGACCGAAGTCTTCCTCCTCATCCTCTCCGCTGACGTCTTCATCGTCTTCCTCTCCTTCTACCTCGTCCTCATCTTCGTCCTCGTCCTCTTCTTCATCAAACTCTTCCTCCTCGccgtcctcctcctcttcctcctcgccCTCCTCGTCTTCGTCCTCGTCCACGCCGTCCACCTCGCCGTCCGAGTCGGAAGCCTCGCGGTCCTCGGCGTCGTATCCGTCCAGGTACGTGAGCTGAGGCAGCAGCTTGAACACGCTCTCCCGATAACCGTTCAGATTCGTCACTTCACAGTTGAACAGATCGAGACTCTTCAAGTGGTCGAGTTTTTTCAGAGGTTCCAAGGTGCTGATGTCTTTCAGTTTGTTACCACTCAGGTCTAGATGCGTCAGGTTTGGGAGTTTCTCCGCTAAAACGTCGAGGCCGCCCGAGATTCTGTTATCACTGAGTTCCAGCTTTTTGAGCTTGGCGAGTTTGGGCAGGTTAGACACGGAGATTAATCCGACGTTTATCAAACTGAGATATTCGAGATTGACGAATTCGGCAGTGAGGCCTTCGATCTTCCCCTCGTTCGATCTGCAGTTCTCCAGAACGAGTTCCTGCacctgaaacaaacaaaacgtAAACGAtattaacacatacacattccCATATACATCCTCTAGCgttcatattcaaatatatgcaaattagtaCTCATTTTATGTGTtgcattttaattcattgtGCTAATATTACAGTAAGGACTTTGCTTCCATTACTTgatagctacattagccttgtagctccagtacGAAACTAAAGAAGCGAACTTCACACCGAACACCACGTTTTGCAGTAACGAGCGACGCCGATCACTCTGAGACGTTCTGATTGGACGAGAGGTGGTACAGTccatgtcacttcctgttcctaCACTGTGACACACCCCTTATTTTCAGTTACGCTATTTTGTGGATTTGCTTATAAATTCCaaaaagttattatattatattgtacattaatattcaaatattt

Function

symbol description
anp32b Predicted to enable histone binding activity. Predicted to be involved in regulation of apoptotic process. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; hematopoietic system; nervous system; optic vesicle; and ventral mesoderm. Orthologous to human ANP32B (acidic nuclear phosphoprotein 32 family member B).

NR:

description
PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member B-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45725 True 1582 lncRNA 0.47 7 1146123 1153326
TU45727 False 459 lncRNA 0.49 2 1119294 1146868
TU45729 False 1419 lncRNA 0.48 7 1132078 1149704

Neighbor

gene id symbol gene type direction distance location
uso1 uso1 coding upstream 24373 1072737 ~ 1094921 (+)
arhgef38 arhgef38 coding upstream 57420 1038675 ~ 1061874 (+)
LOC113524625 LOC108263780 coding upstream 93949 1017394 ~ 1025345 (+)
LOC117596917 NA coding upstream 130490 985548 ~ 988804 (+)
LOC113525488 NA coding upstream 416727 698177 ~ 702567 (+)
hemgn NA coding downstream 9293 1162619 ~ 1165369 (+)
LOC113524617 NA coding downstream 18559 1171885 ~ 1176844 (+)
spag5 spag5 coding downstream 26152 1179478 ~ 1191246 (+)
foxe1 foxe1 coding downstream 95747 1249073 ~ 1257956 (+)
bnc2 bnc2,LOC107595060 coding downstream 240871 1394197 ~ 1583922 (+)
G38585 NA non-coding upstream 49977 1068247 ~ 1069317 (+)
G38582 NA non-coding upstream 69865 1046243 ~ 1049429 (+)
G38571 NA non-coding upstream 125999 993009 ~ 993295 (+)
G38570 NA non-coding upstream 126694 992241 ~ 992600 (+)
G38566 NA non-coding upstream 143599 975350 ~ 975695 (+)
G38596 NA non-coding downstream 5100 1158426 ~ 1159328 (+)
G38608 NA non-coding downstream 97474 1250800 ~ 1772777 (+)
G38623 NA non-coding downstream 116871 1270197 ~ 1271301 (+)
G38607 NA non-coding downstream 141217 1294543 ~ 1390044 (+)
G38637 NA non-coding downstream 180658 1333984 ~ 1335871 (+)
G38577 NA other upstream 53963 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 374295 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 905565 200601 ~ 213729 (+)
trmo trmo other downstream 12519 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 40893 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 830321 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 872162 2025488 ~ 2091343 (+)
LOC113545357 NA other downstream 2678541 3831867 ~ 3834626 (+)

Expression


Co-expression Network