Gene
RNA
| Item | Value |
|---|---|
| gene id | G38593 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 1136664 ~ 1137026 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors | molecular_function |
| GO:0016641 | oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor | molecular_function |
| id | description |
|---|---|
| ko00650 | Butanoate metabolism |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU45737 | True | 244 | lncRNA | 0.39 | 3 | 1136664 | 1137026 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| uso1 | uso1 | coding | upstream | 41743 | 1072737 ~ 1094921 (+) |
| arhgef38 | arhgef38 | coding | upstream | 74790 | 1038675 ~ 1061874 (+) |
| LOC113524625 | LOC108263780 | coding | upstream | 111319 | 1017394 ~ 1025345 (+) |
| LOC117596917 | NA | coding | upstream | 147860 | 985548 ~ 988804 (+) |
| LOC113525488 | NA | coding | upstream | 434097 | 698177 ~ 702567 (+) |
| hemgn | NA | coding | downstream | 25593 | 1162619 ~ 1165369 (+) |
| LOC113524617 | NA | coding | downstream | 34859 | 1171885 ~ 1176844 (+) |
| spag5 | spag5 | coding | downstream | 42452 | 1179478 ~ 1191246 (+) |
| foxe1 | foxe1 | coding | downstream | 112047 | 1249073 ~ 1257956 (+) |
| bnc2 | bnc2,LOC107595060 | coding | downstream | 257171 | 1394197 ~ 1583922 (+) |
| G38585 | NA | non-coding | upstream | 67347 | 1068247 ~ 1069317 (+) |
| G38582 | NA | non-coding | upstream | 87235 | 1046243 ~ 1049429 (+) |
| G38571 | NA | non-coding | upstream | 143369 | 993009 ~ 993295 (+) |
| G38570 | NA | non-coding | upstream | 144064 | 992241 ~ 992600 (+) |
| G38566 | NA | non-coding | upstream | 160969 | 975350 ~ 975695 (+) |
| G38596 | NA | non-coding | downstream | 21400 | 1158426 ~ 1159328 (+) |
| G38608 | NA | non-coding | downstream | 113774 | 1250800 ~ 1772777 (+) |
| G38623 | NA | non-coding | downstream | 133171 | 1270197 ~ 1271301 (+) |
| G38607 | NA | non-coding | downstream | 157517 | 1294543 ~ 1390044 (+) |
| G38637 | NA | non-coding | downstream | 196958 | 1333984 ~ 1335871 (+) |
| G38577 | NA | other | upstream | 71333 | 1063972 ~ 1065331 (+) |
| mtap | mtap,LOC108263789 | other | upstream | 391665 | 722127 ~ 744999 (+) |
| LOC113524725 | LOC108261757,LOC108261316,LOC108263784,LOC108261164 | other | upstream | 922935 | 200601 ~ 213729 (+) |
| trmo | trmo | other | downstream | 28819 | 1165845 ~ 1188594 (+) |
| sh3gl2a | sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 | other | downstream | 57193 | 1194219 ~ 1224601 (+) |
| cdk2ap2 | cdk2ap2 | other | downstream | 846621 | 1983647 ~ 1997265 (+) |
| stox2a | stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 | other | downstream | 888462 | 2025488 ~ 2091343 (+) |
| LOC113545357 | NA | other | downstream | 2694841 | 3831867 ~ 3834626 (+) |
