G38596


Basic Information

Item Value
gene id G38596
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1158426 ~ 1159328 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45740
gttgttgggaacaatgctgatcagtgattggttgttgggaacaatgctgatcagggattggttgttgggaacaatgctgagcagtgattggttgttgggaacaatgctgatcagtgattggttgttgggaacaatgctgatcagggattggtagttgggaacaatgctgatcagtgatcaATCCTCCACACACCCTgctcacagtgcattatgggtaatatactcactccctcacacacagagagaataaCAACAGAGTCTCTGTGTGTTCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45740 True 274 lncRNA 0.45 2 1158426 1159328

Neighbor

gene id symbol gene type direction distance location
uso1 uso1 coding upstream 63505 1072737 ~ 1094921 (+)
arhgef38 arhgef38 coding upstream 96552 1038675 ~ 1061874 (+)
LOC113524625 LOC108263780 coding upstream 133081 1017394 ~ 1025345 (+)
LOC117596917 NA coding upstream 169622 985548 ~ 988804 (+)
LOC113525488 NA coding upstream 455859 698177 ~ 702567 (+)
hemgn NA coding downstream 3291 1162619 ~ 1165369 (+)
LOC113524617 NA coding downstream 12557 1171885 ~ 1176844 (+)
spag5 spag5 coding downstream 20150 1179478 ~ 1191246 (+)
foxe1 foxe1 coding downstream 89745 1249073 ~ 1257956 (+)
bnc2 bnc2,LOC107595060 coding downstream 234869 1394197 ~ 1583922 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding upstream 5100 1119294 ~ 1153326 (+)
G38593 NA non-coding upstream 21400 1136664 ~ 1137026 (+)
G38585 NA non-coding upstream 89109 1068247 ~ 1069317 (+)
G38582 NA non-coding upstream 108997 1046243 ~ 1049429 (+)
G38571 NA non-coding upstream 165131 993009 ~ 993295 (+)
G38608 NA non-coding downstream 91472 1250800 ~ 1772777 (+)
G38623 NA non-coding downstream 110869 1270197 ~ 1271301 (+)
G38607 NA non-coding downstream 135215 1294543 ~ 1390044 (+)
G38637 NA non-coding downstream 174656 1333984 ~ 1335871 (+)
G38676 NA non-coding downstream 303134 1462462 ~ 1464437 (+)
coro2a coro2a other upstream 16492 1102778 ~ 1141934 (+)
G38577 NA other upstream 93095 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 413427 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 944697 200601 ~ 213729 (+)
trmo trmo other downstream 6517 1165845 ~ 1188594 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 34891 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 824319 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 866160 2025488 ~ 2091343 (+)
LOC113545357 NA other downstream 2672539 3831867 ~ 3834626 (+)

Expression


Co-expression Network