trmo (trmo)


Basic Information

Item Value
gene id trmo
gene name trmo
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 1165845 ~ 1188594 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU45743
ACAAATAACACGAGTGCTGACGGAAACCTGATGAATTCAGACATACAGTGTTAATTTGAGATTAATTTTGGGTTTACGTGATTAAAACGTTTCTATAGTTGAAATCTGTgtctttatttgaaaaaaaaaggattaaatttCGTGTAAGATGTCAGCAGGGACGTGCAGCTGTTCAGAACATGTGCAGTGGCTAAAACAGCAAGTTTCAGTCATGAGAAAAGAGATGAAGAACCTCAGgCAGTATGTGGAGAGTTCAGTTCGAGCCCACAGGAAACACATGGCGTCTCTGCACTCCATGCTGAAGGATGTTCTCGATAAAAAGCAGTTGATGACGAAgaatccatcatcatcatcatcatcctcattgtcatcctcctcctcctctcagaGTGCAGCGGGGACGGAGCTGTCGTTAGAGAAAGGTCATATCCGCAGCGTCCCCATCGGcttcatcacttcctgttttgctcGGAAGAACGGCACGCCGAGACAGCCGACCGTCTGCAGCTCGTCTCGCGCTCGTCTCAAAATCCAGTCCTCTGTGTTCAACAACCCTGAACACGCTCTCACCGGCCTGCAGCACTACTCCCacgtctggcTCATCTTTCTCTTCCATAAGAACGGACACATGAGCTATAAAGCTAAAGTGAAGCCTCCTCGTCTGAACGGAGAGAAAGTGGGAGTTTATTCCAC
>TU45744
GGACTCACACTCGCTAAACTGGACTCTATCAcagGTGATGTTCTGCACCTGTCAGGTGTGGATCTGATCTCCGGCACTCCTGTGCTCGATATTAAACCCTATATTCCTGAGTACGACTCTCCCGTCACACACACCACGCTGACTGCAGAGCCGCAGCACCAACAGGAAGTGCCCTCTGACACACCTGACGCCCTGGAGGAAGTAGAACCTGCAGAAGCAGAGGGTTTGGAGAACTCGCGCCTCCTCCTCTCGGCTGGAAGCTGGTGAGAAGCTCGGTGAAGCTGCCGAGGTTTCAGCAGGACGTGATGTTAGCGGTGTGCTGGAGGAGGTGAGGGAGGTTCTCCTGCAGGGGGCGCTGTGTTCTCAGAGCAGGGCTGAagataaacacactgacacaccagCAGCAgcggaagaggaggaggaggaggaagaggaggcgTGTGAGTCGAACAGCAGCGTCGCTTCCTGGATCAGAAAACCTCCAGTACACACTCTGAGTGTGAGATTCACTCCTACTGCAGAGAGACAACTCGCCGACTTCCTGCCTCCTCACTGCTCAGACACAGGAAGGCCGAAGTTCCAGTTTTTAAATGGTCCAGAGGAAGCAGCCGCCGCCATCCGGGGAGTTTTATCAGCTGATCCGAGATCAGTGTACCGGAGGAACCGCTGCAGCGATCGCCTTTTCTTCTTCAGTCTGGACACGGCTCACATCACCTGCTGGTTCGGGGACGGATTCGCTGAAGTGCTGCGCGTTCGGCCCGTGACGAGTCCAGACACACAAGCTCAGGGTCCGAGTGAGCCTTCACTGGTCACCCCCTCTCAAATATAAACTCAGATCTtaaaatttaatcataaatataacatcctgtaagtgtgtgtgatgtgtgtgtgtgtgtgatgtgtgtgtgtgtgtgatgtgtgtgtgatgtgtgtgtgtgatgtgtgtgatgtgatgtgtgatgtgtgtgtgtgagagtgtgtgtgtgtgtgttcaactcATTGTTTAAATCATGCTAAAGATCTGATCTGATGCTGTGATCATTAACAATGCCAAGgttcttgctgtgtgtg
>TU45745
GGACTCACACTCGCTAAACTGGACTCTATCAcagGTGATGTTCTGCACCTGTCAGGTGTGGATCTGATCTCCGGCACTCCTGTGCTCGATATTAAACCCTATATTCCTGAGTACGACTCTCCCGTCACACACACCACGCTGACTGCAGAGCCGCAGCACCAACAGGAAGTGCCCTCTGACACACCTGACGCCCTGGAGGAAGTAGAACCTGCAGAAGCAGAGGGTTTGGAGAACTCGCGCCTCCTCCTCTCGGCTGGAAGCTGGTGAGAAGCTCGGTGAAGCTGCCGAGGTTTCAGCAGGACGTGATGTTAGCGGTGTGCTGGAGGAGGTGAGGGAGGTTCTCCTGCAGGGGGCGCTGTGTTCTCAGAGCAGGGCTGAagataaacacactgacacaccagCAGCAgcggaagaggaggaggaggaggaagaggaggcgTGTGAGTCGAACAGCAGCGTCGCTTCCTGGATCAGAAAACCTCCAGTACACACTCTGAGTGTGAGATTCACTCCTACTGCAGAGAGACAACTCGCCGACTTCCTGCCTCCTCACTGCTCAGACACAGGAAGGCCGAAGTTCCAGTTTTTAAATGGTCCAGAGGAAGCAGCCGCCGCCATCCGGGGAGTTTTATCAGCTGATCCGAGATCAGTGTACCGGAGGAACCGCTGCAGCGATCGCCTTTTCTTCTTCAGTCTGGACACGGCTCACATCACCTGCTGGTTCGGGGACGGATTCGCTGAAGTGCTGCGCGTTCGGCCCGTGACGAGTCCAGACACACAAGCTCAGGGTCCGAGTGAGCCTTCACTGGTCACCCCCTCTCAAATATAAACTCAGATCTtaaaatttaatcataaatataacatcctgtaagtgtgtgtgatgtgtgtgtgatgtgtgtgtgatgtgtgtgtgtgatgtgtgtgatgtgatgtgtgatgtgtgtgtgtgagagtgtgtgtgtgtgtgttcaactcATTGTTTAAATCATGCTAAAGATCTGATCTGATGCTGTGATCATTAACAATGCCAAGgttcttgctgtgtgtg
>TU45746
GGACTCACACTCGCTAAACTGGACTCTATCAcagGTGATGTTCTGCACCTGTCAGGTGTGGATCTGATCTCCGGCACTCCTGTGCTCGATATTAAACCCTATATTCCTGAGTACGACTCTCCCGTCACACACACCACGCTGACTGCAGAGCCGCAGCACCAACAGGAAGTGCCCTCTGACACACCTGACGCCCTGGAGGAAGTAGAACCTGCAGAAGCAGAGGGTTTGGAGAACTCGCGCCTCCTCCTCTCGGCTGGAAGCTGGTGAGAAGCTCGGTGAAGCTGCCGAGGTTTCAGCAGGACGTGATGTTAGCGGTGTGCTGGAGGAGGTGAGGGAGGTTCTCCTGCAGGGGGCGCTGTGTTCTCAGAGCAGGGCTGAagataaacacactgacacaccagCAGCAgcggaagaggaggaggaggaggaagaggaggcgTGTGAGTCGAACAGCAGCGTCGCTTCCTGGATCAGAAAACCTCCAGTACACACTCTGAGTGTGAGATTCACTCCTACTGCAGAGAGACAACTCGCCGACTTCCTGCCTCCTCACTGCTCAGACACAGGAAGGCCGAAGTTCCAGTTTTTAAATGGTCCAGAGGAAGCAGCCGCCGCCATCCGGGGAGTTTTATCAGCTGATCCGAGATCAGTGTACCGGAGGAACCGCTGCAGCGATCGCCTTTTCTTCTTCAGTCTGGACACGGCTCACATCACCTGCTGGTTCGGGGACGGATTCGCTGAAGTGCTGCGCGTTCGGCCCGTGACGAGTCCAGACACACAAGCTCAGGGTCCGAGTGAGCCTTCACTGGTCACCCCCTCTCAAATATAAACTCAGATCTtaaaatttaatcataaatataacatcctgtaagtgtgtgtgatgtGTGTGTGATGTG
>XM_026910949.2
CCAGATTAGAACTATCCAATCAGCGGGCGATGTTTGAATATGAACTAGCCAAGCATAGCGCAGAAGGCGGGAAAATATTAGCCAATCCTAGTCCAGGAGGCGGGATACAACAAACCAATCCTGACATATGAGGCGGGATCCTTACTATCCAATCCTAGAGCAGGAGGGCGGGGCTTTATCAGAATGCGGAAGTGAACAAATAACACGAGTGCTGACGGAAACCTGATGAATTCAGACATACAGTGTTAATTTGAGATTAATTTTGGGTTTACGTGATTAAAACGTTTCTATAGTTGAAATCTGTgtctttatttgaaaaaaaaaggattaaatttCGTGTAAGATGTCAGCAGGGACGTGCAGCTGTTCAGAACATGTGCAGTGGCTAAAACAGCAAGTTTCAGTCATGAGAAAAGAGATGAAGAACCTCAGgCAGTATGTGGAGAGTTCAGTTCGAGCCCACAGGAAACACATGGCGTCTCTGCACTCCATGCTGAAGGATGTTCTCGATAAAAAGCAGTTGATGACGAAgaatccatcatcatcatcatcatcctcattgtcatcctcctcctcctctcagaGTGCAGCGGGGACGGAGCTGTCGTTAGAGAAAGGTCATATCCGCAGCGTCCCCATCGGcttcatcacttcctgttttgctcGGAAGAACGGCACGCCGAGACAGCCGACCGTCTGCAGCTCGTCTCGCGCTCGTCTCAAAATCCAGTCCTCTGTGTTCAACAACCCTGAACACGCTCTCACCGGCCTGCAGCACTACTCCCacgtctggcTCATCTTTCTCTTCCATAAGAACGGACACATGAGCTATAAAGCTAAAGTGAAGCCTCCTCGTCTGAACGGAGAGAAAGTGGGAGTTTATTCCACCGCGCCATCAGCCCTCACACCGCGCTAAACTGGACTCTATCACAACAGCGGGCCATCAGGGACAGGACTCACACTCGCTAAACTGGACTCTATCAcagGTGATGTTCTGCACCTGTCAGGTGTGGATCTGATCTCCGGCACTCCTGTGCTCGATATTAAACCCTATATTCCTGAGTACGACTCTCCCGTCACACACACCACGCTGACTGCAGAGCCGCAGCACCAACAGGAAGTGCCCTCTGACACACCTGACGCCCTGGAGGAAGTAGAACCTGCAGAAGCAGAGGTTTGGAGAACTCGCGCCTCCTCCTCTCGGCTGGAAGCTGGTGAGAAGCTCGGTGAAGCTGCCGAGGTTTCAGCAGGACGTGATGTTAGCGGTGTGCTGGAGGAGGTGAGGGAGGTTCTCCTGCAGGGGGCGCTGTGTTCTCAGAGCAGGGCTGAagataaacacactgacacaccagCAGCAgcggaagaggaggaggaggaggaagaggaggcgTGTGAGTCGAACAGCAGCGTCGCTTCCTGGATCAGAAAACCTCCAGTACACACTCTGAGTGTGAGATTCACTCCTACTGCAGAGAGACAACTCGCCGACTTCCTGCCTCCTCACTGCTCAGACACAGGAAGGCCGAAGTTCCAGTTTTTAAATGGTCCAGAGGAAGCAGCCGCCGCCATCCGGGGAGTTTTATCAGCTGATCCGAGATCAGTGTACCGGAGGAACCGCTGCAGCGATCGCCTTTTCTTCTTCAGTCTGGACACGGCTCACATCACCTGCTGGTTCGGGGACGGATTCGCTGAAGTGCTGCGCGTTCGGCCCGTGACGAGTCCAGACACACAAGCTCAGGGTCCGAGTGAGCCTTCACTGGTCACCCCCTCTCAAATATAAACTCAGATCTtaaaatttaatcataaatataacatcctgtaagtgtgtgtgatgtgtgtgtgtgtgtgatgtgtgtgtgtgtgtgatgtgtgtgtgatgtgtgtgtgtgatgtgtgt

Function

symbol description
trmo Predicted to enable tRNA (adenine-N6-)-methyltransferase activity. Orthologous to human TRMO (tRNA methyltransferase O).

NR:

description
PREDICTED: tRNA (adenine(37)-N6)-methyltransferase isoform X1

GO: NA

KEGG:

id description
K22900 TRMO, trmO; tRNA (adenine37-N6)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU45743 False 693 TUCP 0.47 4 1166040 1168639
TU45744 False 1071 lncRNA 0.53 3 1168704 1171407
TU45745 False 1048 lncRNA 0.53 4 1168704 1171407
TU45746 False 896 lncRNA 0.55 4 1168704 1188594
XM_026910949.2 True 1897 mRNA 0.51 7 1165845 1171282

Neighbor

gene id symbol gene type direction distance location
hemgn NA coding upstream 476 1162619 ~ 1165369 (+)
uso1 uso1 coding upstream 70924 1072737 ~ 1094921 (+)
arhgef38 arhgef38 coding upstream 103971 1038675 ~ 1061874 (+)
LOC113524625 LOC108263780 coding upstream 140500 1017394 ~ 1025345 (+)
LOC117596917 NA coding upstream 177041 985548 ~ 988804 (+)
foxe1 foxe1 coding downstream 60479 1249073 ~ 1257956 (+)
bnc2 bnc2,LOC107595060 coding downstream 205603 1394197 ~ 1583922 (+)
psip1a psip1,LOC108262878,LOC108439950,LOC106610301 coding downstream 595946 1784540 ~ 1806551 (+)
dnajb14 dnajb14 coding downstream 633662 1822256 ~ 1847413 (+)
LOC117596857 pla2g12a,LOC108263807 coding downstream 659631 1848225 ~ 1853432 (+)
G38596 NA non-coding upstream 6517 1158426 ~ 1159328 (+)
G38589 anp32b,an32b,LOC106602331,LOC106602332,LOC106610273 non-coding upstream 12519 1119294 ~ 1153326 (+)
G38593 NA non-coding upstream 28819 1136664 ~ 1137026 (+)
G38585 NA non-coding upstream 96528 1068247 ~ 1069317 (+)
G38582 NA non-coding upstream 116416 1046243 ~ 1049429 (+)
G38608 NA non-coding downstream 62206 1250800 ~ 1772777 (+)
G38623 NA non-coding downstream 81603 1270197 ~ 1271301 (+)
G38607 NA non-coding downstream 105949 1294543 ~ 1390044 (+)
G38637 NA non-coding downstream 145390 1333984 ~ 1335871 (+)
G38676 NA non-coding downstream 273868 1462462 ~ 1464437 (+)
coro2a coro2a other upstream 23911 1102778 ~ 1141934 (+)
G38577 NA other upstream 100514 1063972 ~ 1065331 (+)
mtap mtap,LOC108263789 other upstream 420846 722127 ~ 744999 (+)
LOC113524725 LOC108261757,LOC108261316,LOC108263784,LOC108261164 other upstream 952116 200601 ~ 213729 (+)
sh3gl2a sh3gl2,LOC107595059,LOC107714635,LOC107757631,LOC107700329 other downstream 5625 1194219 ~ 1224601 (+)
cdk2ap2 cdk2ap2 other downstream 795053 1983647 ~ 1997265 (+)
stox2a stox2,stox2a,LOC108434127,LOC107559650,LOC107550915,LOC107748824,LOC107671062,LOC107684970 other downstream 836894 2025488 ~ 2091343 (+)
LOC113545357 NA other downstream 2643273 3831867 ~ 3834626 (+)
nr3c2 nr3c2,LOC107598757 other downstream 3475722 4664316 ~ 4771604 (+)

Expression


Co-expression Network